Acaryochloris marina: AM1_4147
Help
Entry
AM1_4147 CDS
T00617
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amr
Acaryochloris marina
Pathway
amr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AM1_4147 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amr03400
]
AM1_4147 (mfd)
Enzymes [BR:
amr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM1_4147 (mfd)
DNA repair and recombination proteins [BR:
amr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AM1_4147 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABW29128
UniProt:
B0CBL0
LinkDB
All DBs
Position
complement(4182264..4185758)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSFSAIVQALGRSRLSEELLLKLKEQRVLELCGVPRLPKGLVASALAQQRQQHLFVVTAT
LEEAGRWATQLEAMGWQTVYFYPTSEASPYESLDRESEMIWGQLQVLAETLKLNANPEAA
PLAIVTTERALQPHLPPVQIFEPYCLSLEAGIELDLKTLSDKLARLGYERVSLVETEGQW
SRRGDIVDIFPVASELPIRLEWFGDELDKMREFDPTSQRSLDSSEKLTLTPTSFAPITLA
SLSEAQQAQVKAYLTEEELALLETGTLEGSQRFLGMAFETPASLLDYLPENTLVVVDEPM
QCRPHSNRWVEHAQEQWESVSLPEAPLPKLHQDFEAALDQIEVFERVFLSELAEEKGGLN
LSSRTVPAVPHQFGKLAETIREERDRKFSIWLISAQPSRSVALLQEHDCPAQFVPNPKDY
LAIDKLQEYHTPVALKYSGLAELEGFVLPTFRTVVITDREFFGQHTLATPTYIRKRRRAT
SKKVDPNKLQPGDFVVHRNHGIGKFLKLESLTLNHETREYLVLQYADGTLRVAADQLGSL
SRFRNTGEGRPQLNKMSGKAWEKTKNKVRKSIKKLAVDLLKLYAQRAQQEGFTFPLDQPW
QEEMEDSFPYQPTADQLKAAQDVKRDMENPRPMDRLVCGDVGFGKTEVATRAVFKAVTAG
KQVAFLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRSAEERKDIQNRLKTGELDIVVG
THQLLGKSVNFRDLGLLVIDEEQRFGVNQKEKIKTLKTQVDVLTLSATPIPRTLYMALSG
VREMSLITTPPPSRRPIKTHLSPYDPESIRSAVRQELDRGGQIFYVVPRVEGIEEVAGKL
REMVPSARIAIAHGQMVEGELEATMLTFSNGDAEILVCTTIIESGLDIPRVNTILIEDAQ
KFGLSQLYQLRGRVGRAGIQAHAWLFYPNQSSLTEKARKRLRALQEFSQLGSGYQLAVRD
MEIRGVGNLLGAEQSGQMEAIGFDLYMEMLDESINEIRGQEIPQVDEAQVDLNLTAFIPA
DYITDLDQKMSAYRAVASAETKADLTQTAVDWNDRYGPIPDSAQQLLRIMELKQLAKSLG
FSRIKPEDKQHVMLETPMEEPAFKLLKENLPEHLRSRFVYFPGKVTVRGLGVMKADRQLE
SLIDWLGKMKGALPEVEKALVEAG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttctgcaatcgtgcaagccttggggcgttctcgcctatcggaagaattgctg
ctgaaattgaaagagcagcgagtcttagagttatgtggtgtgccccgcttacccaaggga
ctggttgcctccgccctcgcccaacagcgacagcagcatttgtttgtagtcaccgccacc
ctagaagaagctggacgctgggccacccagcttgaagccatgggctggcagacggtttat
ttttatcccacctccgaagcctctccctatgaatccttagatcgagaatccgagatgatc
tgggggcaattgcaggtcttggctgaaacgctgaagctcaatgccaatcctgaggctgcg
cctttagcgattgtgaccacggaacgagccttgcaaccccacttacctcccgtgcagatc
tttgaaccttattgcctgagcttggaagcggggattgagctagacctgaaaaccctgagt
gataagctggcgcgacttggatatgagcgggtctccctagtggagactgaaggccaatgg
agtcggcgcggggacattgtcgatatttttcccgtggcttccgagctgcccattcggttg
gagtggtttggggatgagctggataaaatgcgggagtttgaccccaccagtcagcggtct
ttggatagtagtgaaaagctcactctgacgccgactagctttgccccgattaccttagcg
tctctaagtgaagcccaacaggcccaagtcaaagcctacttaacagaagaggaactggct
ctcttagaaactggaaccttagaaggtagtcagcggttcctggggatggcctttgagacg
cctgcttctctattagattacctgccggaaaatacgctggtggttgtcgatgaacccatg
caatgtcgtcctcatagcaatcgctgggtagaacatgcccaagagcaatgggagtccgtg
agtttaccggaggctccgctgccgaagctgcaccaagatttcgaggccgctctggatcaa
attgaagtgtttgagcgagtctttttgtcggagttggcggaggagaagggtggcttaaac
ctttccagtcggaccgtgcctgcagtgcctcaccagtttggcaagttggccgagactatt
agggaggagcgcgatcgcaaattcagtatctggctcatctccgctcaaccctctcgatcc
gtggccctgttgcaggagcatgactgtcctgcccagtttgtacccaatcccaaagattac
ctcgccatcgacaaattgcaggagtatcacactcccgttgcccttaaatattctgggtta
gcagaactcgaaggctttgtgctgcccaccttccgcacggtggtgattacagaccgcgag
tttttcggtcagcataccctggcaactcccacctatattcgcaaacggcgacgagccacc
tctaaaaaagtcgatccgaacaagctccaaccgggagattttgtcgttcaccgaaatcat
ggcattggcaagttcctgaaattagaaagtctgactcttaatcacgagacccgtgaatat
ttggtattgcaatacgccgatggcactttgcgagtcgcggcggatcaattaggctcctta
tctcgatttcgcaataccggagaagggcgcccccagctgaataaaatgtcggggaaagcc
tgggagaaaaccaagaataaggttcgcaagtccattaaaaagctggcggtggatctgctc
aagctctatgcccagcgggctcagcaggagggatttacctttcccctcgatcagccctgg
caagaagagatggaagactccttcccctatcagcccaccgccgaccagctcaaagccgcc
caagacgtcaagcgggatatggaaaatcctcgcccgatggatcggctggtgtgtggggat
gtcgggtttggtaaaaccgaagtagccacccgtgcggtatttaaagcagtgactgcaggt
aaacaggtagcttttctcgcacctacgaccattctcacccagcagcactaccacacccta
aaagaacgctttgccccctacccgattcaaatcggtctcctcaatcggttccgcagtgcc
gaagaacgcaaagacattcaaaaccgcctcaaaaccggggagttagatattgtcgttggc
acccatcaactcctaggcaaaagcgtcaacttccgggatttgggcctgctggtgatcgac
gaagagcagcggtttggggtgaaccaaaaagagaaaatcaaaaccctaaaaacccaagtg
gatgtgctcacccttagcgccacccccatccctcgtaccttatatatggccctatctggg
gtacgagaaatgagcctgattaccactccacccccttctcgtcgtccgattaaaacccat
ctgtctccctacgatccagaatcgattcgcagtgctgttcgccaagagctagaccgaggc
ggccagattttttatgtggtgccccgagtggaaggaatcgaagaagtggcgggtaagctg
cgggaaatggtgcccagtgcgcggattgccattgcccacggtcaaatggtagagggggag
ttggaggcgacgatgctcacctttagcaatggcgatgccgaaatcctagtctgcaccacc
attattgaatcgggactggatattccccgcgtcaatacgattttgatcgaagatgcccaa
aagtttggcctctcccagctctatcagctccgaggtcgggtggggcgcgctgggattcaa
gcccacgcctggctgttttatcccaatcaaagttcactgacggagaaggctcgcaagcgg
ctccgggcgctacaagagtttagccagcttgggtccggctatcagttggcggtgcgggat
atggaaattcggggcgtcggtaatttgctaggggcggaacagtccgggcaaatggaggcc
atcggctttgacctctatatggagatgctggacgagtccatcaatgaaattcgcggtcaa
gaaattcctcaggtagatgaggcccaggtggatctcaatctgacggcctttattcccgcc
gattacattaccgatttggatcaaaagatgagtgcctatcgggcggtggcttcagcagag
accaaagccgaccttacccaaaccgccgtggactggaacgatcgctatggtccgattccc
gattcagcccaacagctattgcggattatggaacttaagcagttggcaaaatccttgggc
ttctcgcggatcaaaccagaggataaacagcatgtgatgctggaaacgccaatggaagaa
cccgcctttaagttactaaaggagaatctacctgaacatttgcgatcgcgtttcgtatac
ttccccggtaaggtaacggtccgagggcttggcgttatgaaagccgaccgccaattggaa
agcctgatcgactggctaggcaaaatgaagggtgccttacctgaagtcgagaaagcttta
gtagaagcaggttag
DBGET
integrated database retrieval system
