Achromobacter mucicolens: PE062_02685
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Entry
PE062_02685 CDS
T08808
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amui
Achromobacter mucicolens
Pathway
amui03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PE062_02685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amui03400
]
PE062_02685 (mfd)
Enzymes [BR:
amui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PE062_02685 (mfd)
DNA repair and recombination proteins [BR:
amui03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PE062_02685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
UB2H
AAA_30
ERCC3_RAD25_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WBX89575
LinkDB
All DBs
Position
complement(579999..583481)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSASSLMPAPSSSATAAPPVPATVPTLSALKPGTRYAQPRPPGSGDAWLLADLARQAGGP
LVILTAEPLEAQRLAEEIQLFAPGLRVRQLPDWETLPYDAFSPHQDLISERLHTLHSLMM
KSVDVLTVPITTALYRLAPPSFLAAYTFSFKQKDRLNEAALRAQLTLANYNHVTQVTAPG
EFCLRGGLIDLFPMGSVVPYRLDLFDDEIETIRSFDVDTQRSLYPVREVQLLPGREFPMD
EDARNRFRARFREIFEGDPSRALPYKDIGNSIPFAGVEYYLPLFFEETATLFDYVAEGTV
MVTVGDIDDAIQRFNQDTASRYGFLKSDRERPVLPPSALFLDNESLYGRLKAFRRLSLTA
GQPHPDFRAAPDVSVARRAEDPIAKLRTLVQAGQTRVLLCADSAGRRETLVQMLHEFGVT
PDAQPETIEAFLASDAHFGIVASPLGVGFQLPDANLAFLTENDLYPGLAMPGRRGKRDQE
RASNVEAMVRDLSELREGDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYANGSTLYVP
VSQLHVIARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLALYAQRAAREGFA
FNLPLNDYEAFAEGFGFEETADQAAAIQAVISDMTSGRPMDRLVCGDVGFGKTEVALRAA
FLAVANGKQVALLCPTTLLAEQHAQTFTDRFADWPVRVVELSRFRSAKEVSAAIEGINDG
RVDIVIGTHKILSKDVKFKRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRT
LGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTLREALLRELKRGGQCYFLHNEVETI
HNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRYNVLLCTTIIETGIDVPSANT
IVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSG
FYLAMHDLEIRGTGEVLGDSQSGNIQEVGFSMYNEMLNEAVRALRAGEEPDLDAPFNLAC
EVNLHAPALLPSDYCADVHARLAIYKRLAHAADEDDLIHIQEELIDRFGKLPEAAQTLLA
THRLRLAAQPLGIVKIDASEAQALIQFGPKTSVDPARIIDLVQRQRHIKLAGQDKLRAEI
KAPLIPARADAVRAVLRALK
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcttccagcctgatgcccgccccttcctcctccgccacggccgccccccccgtc
cccgccacggttcccaccctgtccgcgttaaagcccggcacgcgctacgcgcagcccagg
ccgccgggatccggcgacgcctggctgctggcggatctggcccgccaggccggcggtccg
ctggtcatcctgacggccgagcccctggaagcgcagcgcctggccgaggaaatccagctg
ttcgcgcccggtctgcgcgtgcggcagttgcccgactgggaaacgctgccctacgacgcg
ttctcgccgcaccaggacctgatttcggagcgcctgcacacgctgcattcgctgatgatg
aagtcggtggacgtgctgaccgtacccatcaccacggcgctctaccggctggcgccgccc
tcgttcctggccgcctacaccttctcgttcaagcagaaagaccggctgaacgaagcggcg
ctgcgcgcgcagctgacgctggccaattacaaccacgtcacccaggtgaccgcgcccggc
gaattctgcctgcgcggcggcctgatcgacctgttcccgatgggctcggtggtgccgtac
cgcctggacctgttcgacgacgaaatcgagaccatccgcagtttcgacgtggacacccag
cgcagcctgtaccccgtgcgcgaggtccaactgctgccaggccgagaattcccgatggac
gaggacgcgcgcaaccggttccgcgcgcgctttagggaaattttcgaaggcgatccctcg
cgcgccctgccctacaaggacatcggcaacagcatcccctttgccggcgtcgagtactac
ctgccgctgtttttcgaagagaccgccacgctgttcgactacgtggccgaaggcacggtc
atggtcacggtcggcgacatcgacgacgcgatccagcggttcaaccaggacacggccagc
cgctacggcttcttgaagagcgatcgcgaacgtcccgtgttgccgccctcggccctgttc
ctggataacgaatcgctgtatggccggctgaaggcctttcgccgcctgtcgctgactgcc
ggccagccgcaccccgacttccgggccgcgcccgatgtcagcgtggcgcgccgcgccgag
gatccgatcgccaagttgcgcacgctggtgcaggcgggccagacccgcgtgctgctgtgc
gccgattccgcagggcgccgcgaaacccttgtgcagatgctgcacgagttcggcgtcacg
cctgacgcgcagcccgaaaccatcgaagccttcctggcgtcggacgcgcatttcggcatc
gtcgcctcgccgctgggcgtgggcttccagctgccggacgcgaacctcgccttcctgacc
gaaaacgacctctaccccggattggcaatgccgggacgccgcggcaagcgcgaccaggag
cgcgccagcaacgtcgaagccatggtgcgcgacctgtccgagctgcgcgagggcgatccc
gtcgtccacgcccagcacggcatcgggcgctaccacggcctggtcaacatggacatgggc
gaaggcgagatggagtttcttcatcttgaatacgccaacggcagcacgctgtacgtgccg
gtgtcgcagctgcacgtgatcgcccgctacagcggcgcggatccggaagccgcgccgctg
caccagctgggctcggggcaatgggacaaggcccgccgcaaggcagccaagcaggtgcgc
gacaccgccgcggaactgctggcgctgtatgcgcagcgcgccgcgcgcgaaggctttgcg
ttcaacctgccgctgaacgactacgaggccttcgccgagggcttcggcttcgaagaaacg
gccgaccaggccgccgcgatccaggccgtcatcagcgacatgacctccggccgccccatg
gaccgtctggtctgcggcgacgttggcttcggcaagacggaagtcgcgctgcgcgccgcc
ttcctggccgtcgccaatggcaagcaggtggcgctcttgtgccccaccaccctgctcgcc
gagcagcacgcccagaccttcacggaccggttcgccgactggcccgtacgcgtggtggaa
ctgtcgcgctttcgctcggccaaggaagtctcggccgccatcgaaggcatcaacgacggc
cgggtcgacatcgtcatcggcacgcacaagatcctttccaaggacgtgaagttcaagcgg
ctgggtctggtcatcatcgacgaggaacaccgtttcggcgtgcgccagaaggaagcgctc
aagtcgctgcgggccgaggtcgacgtcctgacgctcaccgccacgcccattccccgcacg
ctcggcatgtcgctggaaggcatccgcgacttctccgtcattgccacggcgccgcagaag
cgcctggccatcaagaccttcgtgcggcgcgaagacggcagcacgctgcgcgaggccctg
ctgcgcgaactcaagcgcggcggccagtgctacttcctgcacaacgaggtcgagaccatc
cacaaccgccgggcgcgcctggaagaactggtgcccgaggcccggatcgccgtcgcgcac
ggccagatgcccgagcgcgaactcgaacaggtgatgaagggcttctaccagcagcgctac
aacgtgctgctgtgcaccaccatcatcgaaaccggcatcgacgtgcccagcgcgaacacc
atcgtgatccatcgcgccgaccgcttcggcctggcgcagcttcaccagttgcgcggacgc
gtcgggcgctcgcaccatcaggcctacgcctacctgctgacgccgggcgaggacgcgatc
accagcaacgccaagaaacggctggaagccatccaggccatggaagagctcggctcgggc
ttttacctggcgatgcacgacctcgaaatccggggcaccggtgaagtgctgggcgactcg
cagtcgggcaacatccaggaagtgggcttctcgatgtacaacgagatgctcaacgaggcc
gtgcgcgcgctgcgcgccggcgaagaacccgacctggacgcgcccttcaacctggcgtgc
gaggtcaacctgcacgccccggcactgctgccgtccgactattgcgccgacgtgcatgcg
cgcctggccatctacaaacggctggcgcacgccgccgacgaagacgacctgatccacatc
caggaagaactgatcgaccgattcggcaagctgccggaagcggcccaaaccctgctggcc
acgcaccgcctgcgccttgcggcccagccgctgggcatcgtcaagatcgacgccagcgaa
gcgcaggccctgatccagttcggccccaagacctcggtcgatccggcccgcatcatcgac
ctcgtccagcggcagcgtcacatcaagctggccggacaggacaaattgcgcgccgagatc
aaggcccccctaattcccgccagggccgacgccgtgcgcgccgtcctgcgcgcgctcaag
taa
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