Achromobacter mucicolens: PE062_10220
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Entry
PE062_10220 CDS
T08808
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amui
Achromobacter mucicolens
Pathway
amui03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amui00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PE062_10220 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amui03400
]
PE062_10220 (ligD)
Enzymes [BR:
amui01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PE062_10220 (ligD)
DNA repair and recombination proteins [BR:
amui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PE062_10220 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WBX90986
LinkDB
All DBs
Position
complement(2223366..2225888)
Genome browser
AA seq
840 aa
AA seq
DB search
MADSLKKYREKRNFQVTSEPAGGGEANEDARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPCYDPAVKRMAVQVEDHPIAYNQFEGQIPEGQYGAGKVVIWDEGKWMPVGDPRKGYR
DGHLKFDLQGVKMQGRWALIRLKGKESDKQPPWLLIKDRDAFARPEREFSVVDEMPDSVV
PLRAAKAPSPDQSEDQPESSAAGQRALPGVAADLPAHLKPQLATLVDGVPHHAPDWLYEM
KFDGYRMVVRIEGDDVRLYTRNGHDWSAKLPHLVEAFRALPAKWAWLDGEIVMLDREGIP
NFQALQNAFDGERTQDIVFYAFDLPFIGQRDLRQEPLTVRRALLQQLMDTTEDDHLRFSE
ALEAAPSDLVATACKMGLEGIMAKRLSSPYVSRRTNTWVKVKCARRQEFAIVGYTAPKGS
RAGLGALLLAVAEQDGSLRYAGKVGTGFDDASLVSLQKRLASIETDKKPVANTPAAGGVR
WVKPELIAEVSFGEWTGGGHIRHSVFRGLRQDKPVRAISREKAVPVKDIEGDAGATKPAS
KAAPASRASRAKGGKLTNADRVIDPSTKLTKLDLARYYALVAPLMLEHLKGRPVSFLRAP
AGIHGEFFFQKHLEAAMPGVKSLPAKLDPDHPPLLEVPTAEAIMSAVQMNVVEFHTWNAV
KTSIGKPDRMLFDLDPGEGVQWPAMQQAANLVRVLLEEIGLKAWLKTSGGKGLHVVVPLR
KQYDWDTVKRFSQVIVKHLARTLPQLFVAKSGPKNRVGKIFADYLRNGFGATTVCAWSAR
ARPGLGVSVPVKWEELDKLTGGAHWTIQDIHARLDAGNTPWDDYAPQSLAPAMSAMEFAP
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccgattcgctcaagaagtaccgcgaaaagcgcaactttcaagttacctcggaaccg
gcaggcggcggcgaggcgaacgaggacgcgcgcgctttcgtgatccagaagcactgggcg
agccggctgcactacgacttccgtctggaactggacggcgccatgaagagctgggcggtg
cccaagggtccttgctacgacccggccgtcaagcgcatggccgtccaggtcgaggaccat
cctattgcctacaaccagtttgaggggcagattcccgaaggccagtacggcgcgggcaag
gtcgtcatctgggacgaaggcaagtggatgcccgtgggcgacccgcgcaagggctatcgg
gacggtcatctgaaattcgacctgcagggcgtcaagatgcagggcaggtgggcgctgatc
cgcttaaagggcaaggaaagcgacaagcagccgccctggttgctcatcaaggatcgtgat
gcgttcgctcggccggagcgggagttcagcgtggtggacgaaatgcccgacagcgtggtc
ccgctgcgcgcggccaaagcgccatccccagatcaatccgaagaccaacctgaatcttcg
gccgccggccaacgcgctttgcccggcgtggctgcagatttgccggcgcatctgaaacca
cagctcgccacgctggtggacggcgtgccccaccacgccccggactggctgtacgaaatg
aaattcgacggctaccggatggtggtgcggattgaaggcgacgacgtgcgcctttatacc
cgcaacggccacgactggagcgccaagctgcctcatctggtcgaagcgtttcgcgcgttg
cctgccaaatgggcctggttggatggcgaaatcgtgatgctcgaccgcgagggcattccg
aacttccaggcgctgcagaacgccttcgacggcgagcgcacgcaagatatcgtcttctac
gcctttgatctgcctttcatcgggcagcgggatctgcgccaggaacccctgacggtgcgc
agggcgctgctgcagcaactgatggacaccactgaagacgatcatctgcgattcagcgag
gccctggaggccgcgccgtcggatctggtggcgacagcctgcaagatggggctggaaggc
atcatggccaagcgcctgtcctcgccctatgtgtcgcgccgcacaaatacctgggtgaag
gtcaaatgcgcccggcgccaggaatttgccatcgtcggctacacggcgccgaagggcagc
cgcgcggggctgggggcgctgctgcttgccgtggccgagcaggatggcagcctgcgctat
gccggcaaggtcggcacaggtttcgatgacgccagcctggtgtcgctgcaaaagcgcctg
gcgtccatcgagaccgacaagaagcctgtcgcgaacacgcccgccgcaggtggcgtacgc
tgggtcaagcccgaactgatcgcagaggtgtcgtttggcgagtggacggggggcggacac
atccgtcattctgtctttcgaggactgcggcaggacaagccggtgcgggccatttccagg
gagaaggcggtgccagtcaaagacatcgagggcgatgcgggcgcgaccaaaccggccagc
aaagcggcgcccgcctccagggccagccgcgccaagggcggcaagctcaccaatgcggat
cgcgtcatcgatccgtccaccaagctcacgaagctggacctggcacgctattacgcgctg
gtggcgccgctgatgctggaacacctgaagggacgcccggtatcgtttctgcgcgcgccg
gccggcatccatggcgaattcttcttccagaagcacctggaagccgcgatgccgggcgtc
aaatccttgccggccaagctcgacccggaccatccaccgctgctcgaagtgcccacggcc
gaggccatcatgtccgcggtgcagatgaacgtggtcgaatttcacacctggaacgcggtc
aagacgtccatcggcaagccggatcggatgctgttcgacctggacccgggcgagggcgtg
cagtggcccgcgatgcaacaggccgcgaacctcgtgcgcgtgctgctggaagaaatcggg
ctgaaagcgtggctcaagaccagcggcggcaagggcctgcacgtggtcgtgccgctgcgc
aaacagtacgactgggacacggtgaagcgcttttcccaggtgatcgtgaagcatctggcg
cggacactaccgcaactatttgtggccaagagcgggccgaagaaccgggtcggcaagatc
tttgcggactacctgcgcaatggatttggcgcgaccaccgtttgcgcctggtcggcgcgg
gcgcgtcccggtctgggcgtgtcggtgcccgtcaagtgggaagagctggacaagctaacg
ggcggggcgcactggacgatccaggatatccacgcccggctggacgcgggcaacacccca
tgggacgattacgcgccgcagtccctggcgcccgccatgtccgccatggagttcgcgcca
tga
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