Pelagerythrobacter marensis: AM2010_1012
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Entry
AM2010_1012 CDS
T03951
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
amx
Pelagerythrobacter marensis
Pathway
amx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM2010_1012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
amx03019
]
AM2010_1012
Enzymes [BR:
amx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AM2010_1012
Messenger RNA biogenesis [BR:
amx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AM2010_1012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKM07088
UniProt:
A0A0G3X9R9
LinkDB
All DBs
Position
complement(1056210..1057589)
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AA seq
459 aa
AA seq
DB search
MTFDQLGLSQPVLQALDLKGYNTPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSI
DRLREAGRQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNK
LHRGTDILVATPGRLLDLIDQKAFGLGSVEILVLDEADQMLDLGFIHALRKISQLVPEDR
QTLFFSATMPKQIKELVGKYCRQPVHVSVTPESTTAERIAQYLFMVQQDEKQTLLEMILR
GRHPVPGKIERVLVFTRTKHGADRVVKKLAQAGVPANAIHGNKSQPQRERALSEFRSAKT
PVLVATDVAARGIDIPGVSHVVNYELPNVPEQYVHRIGRTARAGADGIAIAFCAEDERAY
LKDIRKTTDAEFERLPLPDNFRAVVEGVGPTKPEPRQPRQRVAVKPRGDGRSGEQRKSSS
KHPGRAGKPRAAEGRSGEGEGGRPQQQRRRRRPGRSGRA
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgatcaactcgggctgtcgcagcccgttcttcaggcgctcgacctgaaaggt
tacaacacgcccacgccgatccaggcgcaggccattccccccgtgctcgaaggccgcgac
ctcttgggtatcgcgcagacgggaacgggcaagacggcggctttcatgctgcccagcatc
gaccggctgcgcgaggcggggcggcagacgccgttcaaatcgtgccgtatgctcgtgctc
gcccccacgcgcgaactggccgggcagatcgcccagtcggcgaaggattacggcgcgctc
gccggccttaaagtgcagtcgatcgtcggcggcacttcggtcaacaaggatcgcaacaag
ctgcaccgcggcaccgacattctggtcgccacgccgggccgcctgctcgacctgatcgat
cagaaggcctttggcctgggttcggtcgagatcctcgtcctggacgaggcggaccagatg
ctcgacctcggcttcatccatgccctgcgcaagatcagccagctcgtgcccgaagaccgc
cagacgctgttcttcagtgccacgatgcccaagcagatcaaggaactggtcggcaaatat
tgccgccagccggtccatgtctcggtcacgcccgaaagcacgactgcagagcggatcgcg
cagtacctgttcatggtccagcaggacgagaagcagaccctgctcgaaatgatcctgcgc
gggcgccatccggtgccgggcaagatcgagcgtgttctggtgttcacccgtaccaagcac
ggcgcggatcgcgtggtgaagaaactggcccaggccggcgtccccgccaacgccattcac
ggcaacaagagccagccgcagcgcgagcgtgcgctgagcgagttccgttcggcgaagacg
ccggttctcgtcgccaccgacgttgcggcgcgcgggatcgacattccgggcgtcagccac
gtggtcaattacgagctgcccaacgtgcccgaacagtacgtccaccgcattggccgcacc
gcgcgtgcgggggcggacgggatcgcaatcgctttctgtgctgaggacgagcgagcttat
ctgaaggatattcgcaagacgacggatgcggaattcgaacgcctgccactgccggacaat
ttccgtgcggtggtggaaggcgtcgggccgaccaagccggaaccgcgccagccccgccag
agggtcgcggtcaagccgcgcggtgacgggcgttcgggagagcagcgcaagtcgagctcc
aagcatcccggtcgcgcgggcaagccccgcgctgccgaagggcgcagtggggaaggcgaa
ggcggtcggccccagcaacagcgccgccgcaggcgtcccggtcgtagcggtcgggcctga
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