Pelagerythrobacter marensis: AM2010_2477
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Entry
AM2010_2477 CDS
T03951
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amx
Pelagerythrobacter marensis
Pathway
amx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AM2010_2477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amx03400
]
AM2010_2477
Enzymes [BR:
amx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AM2010_2477
DNA repair and recombination proteins [BR:
amx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AM2010_2477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKM08532
UniProt:
A0A0G3XBK9
LinkDB
All DBs
Position
2636641..2639190
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AA seq
849 aa
AA seq
DB search
MSRRDPLAEYNRKRDFSKTAEPAGERAGGEGGSRFIVQKHAASRLHWDFRLEADGVLKSW
AVTKGPCPDPDVKRLAVRTEDHPMSYADFEGTIPKGEYGGGTVMLWDRGTWAPVEGKSWK
DIEKGHLHFTLDGERMKGEWLLVRMKKKPGEKRENWLLRKIEDEHAEPGDTLVERELTSV
LTGRAMAEIAADKQGEHSLEGKSGRAFAREMAKAGENNAKKAAKAKKKPARKGGAGKPPA
FRKLQLATLVDAVPAGNGWMHEIKFDGYRALIAAAGGTVRVYTRSGKDWSEKFAPLARAF
AALDLPACLIDGEIVAYDTAGNPDFSSLQRVLKRGHGAQGESDRLAFHGFDLLEADGEDL
TGLPNVERKERLEALLEGVEAPIHVADHVIGAGEKLYRAMCDAAQEGIISKTIDAPYRGS
RTRNWVKVKCTLRQEFVIVGWKASSAKGRPFASLLLAQHEGSGEDARLVYKGNVGTGFSH
ETLEDMAAKMKRLERKTPPVEVDRASARQVTWVTPKLVAEIAFSEFTADGNVRHGSFLGL
RSDKDADEVRPEKAGSAPDTGAAQDVEISSRERVIFPDAKCTKGDLADYYADVAPLMLPF
AAQRPVSLVRCPQGRAKKCFFQKHDSGSFGPHVRHVPIAEKKGGTEDYLYLEDAAGLLAC
VQMGTIEFHGWAARSGDVERPDRMIFDLDPDEGLDFADVKQAAEDLRRKLADIGLTSHAM
LTGGKGVHVVVPLTPGHSWEVHKDFASRFAEALSMAEPDRFTATMSKAKRKGKIFIDWLR
NQRGSTAVVPYSARAREGAPVAAPIAWGELKSFGDAKPFTIADAAKLHARAKSKSLAGWG
FAEQRLPDI
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaggcgcgaccccctggccgaatacaatcgcaagcgcgatttctcgaagaccgcg
gaaccggcgggggagcgcgccgggggcgaaggcggcagtcgcttcatcgtccagaagcac
gcggccagccgccttcactgggatttccggctggaagccgacggcgtgctcaagtcctgg
gccgtgaccaaggggccgtgtcccgatcccgacgtcaagcgcctggccgtgcggaccgag
gatcacccgatgtcctacgccgatttcgaaggcacgatcccgaagggcgaatatggcggc
ggcacggtcatgctgtgggatcgcggcacctgggccccggtggaaggcaagagctggaag
gatatcgaaaagggccacctgcacttcactctcgatggagagcggatgaagggcgaatgg
ctgctcgtgcgcatgaagaagaagccgggtgaaaagcgcgaaaactggctcctgcgcaag
atcgaagacgaacatgccgaacccggcgacacgctggtggagcgcgagctgaccagcgtc
ctgaccggccgcgcgatggcggaaatcgccgccgacaagcagggcgagcactcgctcgaa
ggcaagtcgggccgggcattcgcaagggaaatggccaaggcgggcgaaaacaacgcgaag
aaggcggcgaaagcgaagaagaagccggcgcgcaaggggggcgccggcaagccaccggca
tttcgcaagctgcaactggccacgctggtcgatgcggtgcccgcgggcaatggctggatg
cacgagatcaagttcgacggttatcgcgcgctgatcgccgctgcgggcgggacggtgcgc
gtctatacccgcagcggcaaggactggagcgaaaagttcgccccgcttgcccgcgccttc
gccgcgctcgacctgccggcctgcctgatcgacggggagatcgtcgcttacgataccgcg
ggcaatcccgatttctcctcgctccagcgcgtgctcaagcgcgggcacggcgcgcagggg
gaaagcgaccggctcgccttccatggcttcgacctgctcgaagccgatggcgaggacctg
accggcctgcccaatgtcgagcgcaaggaacggctggaggcgctgctcgaaggggtcgag
gcgccgatccacgtcgccgatcacgtgatcggcgcgggggagaagctctaccgcgcgatg
tgcgacgcggcgcaggaagggatcatctccaagacgatcgacgccccctatcgcggcagc
cggacgcgcaactgggtgaaggtcaagtgcacgctgcgtcaggaattcgtgatcgtcgga
tggaaggcgtcgagcgcgaaaggccgccccttcgcctcgcttctgctggcccagcacgaa
ggatcgggcgaggatgcgcggctcgtctacaagggcaatgtcgggaccggcttctcgcac
gagacgctggaggacatggcggcgaagatgaagcggctggagcgcaagacgcccccggtc
gaggtcgatcgcgcttccgctcgccaggtcacctgggtgacgccgaaactggtcgcggaa
atcgccttcagcgaattcaccgccgacggcaatgtccgccacggcagcttcctcggtctg
cgcagcgacaaggacgcggacgaggtccggccggagaaggcaggcagcgcacctgacacc
ggggccgcgcaggacgtggagatatcgagccgcgagcgggtgatcttccccgatgcgaag
tgcaccaagggcgatctggccgattactacgccgatgtcgcgccgctgatgctgcctttc
gcggcccagcgcccggtcagcctggtccgctgcccccaggggcgggcgaagaagtgcttc
ttccagaaacatgacagcggatcgttcggcccccacgtcaggcacgtgccgatcgcggag
aagaagggcgggaccgaggactatctctacctggaggatgccgcgggcctgctcgcctgc
gtgcagatgggcacgatcgaattccacggctgggccgcgcgcagcggcgatgtcgagcgg
cccgaccggatgatcttcgacctcgacccggacgaagggctggatttcgccgacgtgaaa
caggccgcggaggacctgcgccgcaagctggccgatatcgggctgaccagccatgccatg
ctgaccggtggcaagggggtgcacgttgtcgtgccgttgacccccggccattcgtgggag
gtgcacaaggatttcgccagccgctttgccgaggcgctgagcatggccgaacccgatcgc
ttcaccgcgacgatgagcaaggcgaaacgcaagggcaagatcttcatcgactggctgcgc
aaccagcgcggcagcaccgcggtcgtcccctattcggcgcgcgcgcgcgaaggggcgccg
gtggccgcgccgatcgcctggggcgagttgaaatcgttcggcgatgccaagccgttcacg
atcgccgacgcggcgaagctgcacgcgcgcgcgaagtcgaaatcgctcgccgggtggggc
tttgccgagcagcgcctgcccgatatctag
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