Schaalia meyeri: ADJ76_01040
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Entry
ADJ76_01040 CDS
T04027
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amy
Schaalia meyeri
Pathway
amy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ADJ76_01040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amy03400
]
ADJ76_01040
Enzymes [BR:
amy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ADJ76_01040
DNA repair and recombination proteins [BR:
amy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ADJ76_01040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AKU64543
LinkDB
All DBs
Position
232296..235880
Genome browser
AA seq
1194 aa
AA seq
DB search
MLLTGLLPDISTDPAIETASDSVEAGRSGTIVAPVGIRPPLLARLASRAAAPLVVLTATG
RDAESLTNALASWIPGVAMLPAWETLPHERLSPQVDTMARRIAVLRRLVHPIAGDESAGP
LSVLVVPIRAFLQPIIAGLADLEPVRVRTGDILDLTDTANRLAELGYERVDMVEGRGHMS
VRGGILDVFPPQEPHPLRVELWGDEVEDIRAFSVSDQRTLGEAEEGLWAVPCRELLLTQA
VRARAREAADRLPGAAEMLSLAAEGIAAPGIESLAPILVGGMESLLDLLPAASPILASDP
ERIRARAADLVATTEEFLTAAWSAAAGGADTPLEASRASFLDLGDLWGSGTRPWWEITDL
PPADLAAAVNEAEGGQPAEEGPSPLVVSPTLVRVGARDVRPYRGDFARATSDLIDLARDG
WRIVVTTEGPGPGRRLRSILTDASCPAALADNIDARPEAGLVTITTAQAGVGFVAPHLKI
AVLTEGDLTGRAGASTRDMRRMPSRRRKGVDPLTLHPGDYIVHDQHGIGRFVELVSRSIG
RDQARSTRDYLVIEYAPSKRGQPADRLFVPTDALDQISKYTGSDEPSLTKMGGADWAKAK
ARAKKAVGEVAKELIRLYAVRQQTKGHAFGPDTPWQRELEDAFPYAETPDQLVTIDEVKA
DMEKPVPMDRLLTGDVGYGKTEIAVRAAFKAIQDGYQAAVLVPTTLLVTQHAETFAERYA
GFPVRIGTLSRFSTRQETEEVKAGLASGEVDLVIGTHSLLTGTVSFKKLGLVIIDEEQRF
GVEHKETLKALRTDVDVLSMSATPIPRTLEMAISGIREMSILQTPPEERQPVLTFVGAYT
DAQVSAAIRRELLRDGQVFYVHNRVDSIASIAAGIGELVPEARVRTAHGRMNEHQLEAVI
QDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADTYGLSQLHQLRGRVGRGRERAYAYF
FYPGDKALTETAHERLKTIAANTELGDGLAVAQRDLEIRGAGNLLGGAQSGHVEGVGFDL
YVRMVSDAVAAYRGEAPAEKTDVRMDLQVDAHIPEDYVQGERLRLEVYAKIAAITTLEQE
ADVREELIDRYGPIPAQVDLLFSLARLREVVRRAGITEVVTQGKYLRVSPVQLRDSQVMR
LKRLHPGTVIKAALRQVLVPLPLTSRVGGSPLTDGPLLEWVETLVTKILVPFGE
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
gtgttactcaccggactcctcccggacatttccaccgacccggcaatcgagacggcctcc
gactccgtcgaagccggccgttcgggcacgattgtcgcccccgtcggcatccgtccgccc
ctcctggcgcgcctcgcatcccgagcggccgcgcccctggtcgtcctgaccgccaccgga
cgcgacgcagaatcgctgaccaacgccctggcctcgtggataccgggtgtcgccatgctg
cccgcatgggagactctcccacacgagcgcctctcgccccaggtcgacaccatggccagg
cgtatcgccgtcctacgccgcctcgtccaccccatcgccggagacgagagcgccggcccc
ctctcggtcctggtcgtccccatccgcgccttcctccagccgatcatcgccgggctggcc
gacctcgaacccgtgcgcgtgcgcaccggggacattctcgacctcaccgacaccgccaac
cgccttgccgaactgggatacgagcgcgtcgacatggtcgagggacgaggccacatgagc
gtgcgcggcggcatcctggacgtcttcccgccgcaggagccccaccccctgcgcgtcgaa
ctctggggcgacgaggtagaagacatccgcgcgttctccgtctctgatcagcgcaccctc
ggggaagcagaagaaggactgtgggccgttccctgccgcgagctgctgctgacccaggcc
gtacgcgcccgtgcccgcgaggcggccgaccggttgcccggcgccgccgaaatgctctcc
ctcgccgccgagggaatcgccgcacccggcatcgaatccctggctcccatcctcgtggga
ggcatggaatcgctgcttgacctcctgcccgcggcctccccgatcctcgcctccgacccc
gagcgcatccgcgcccgggcagccgacctggttgccaccaccgaagagttcctgaccgcc
gcctggagcgccgccgccggtggcgcagacacaccccttgaggcctccagggcgtccttc
ctcgacctgggggacctgtggggaagcggcacgcgaccctggtgggaaatcaccgacctg
ccgccagccgacctggctgccgccgtcaacgaggccgagggcgggcaaccggcagaggag
gggccgagccccctggtcgtctcccccaccctcgtgcgcgtcggcgcgcgcgacgtccgc
ccctaccggggggacttcgcccgcgccacgagcgacctgatcgacctcgcccgagacggc
tggcgcatcgttgtcaccaccgaaggccccggcccgggccggcgcctccggtccatcctc
accgacgcctcgtgccccgcagcgctcgcggacaacatagacgcgcggcccgaggccggc
ctggttacgatcacgaccgcgcaggccggcgtcggattcgtggcaccccacctgaagatc
gccgttctcacagaaggcgacctcaccgggcgggccggggcatccacgcgcgacatgcgg
cgcatgccctcacgcaggcgtaaaggcgtcgacccgttgacattgcaccccggggactac
atcgtccacgatcaacacggcatcgggcgattcgtcgaactggtgtcacgctcgatcggg
cgcgaccaggcccgctccacgcgcgactacctggtcatcgaatacgcgccctccaagcgt
ggacagccagccgaccgcctcttcgtgcccaccgacgccctggatcaaatctccaaatac
acgggaagcgacgagccctcactgacgaagatgggcggggccgactgggcgaaagccaag
gcccgcgcgaagaaggccgtgggcgaagtcgccaaagagctcattcgactgtacgccgtg
cgccaacaaaccaaggggcacgcctttggcccggacacgccctggcaacgcgaactcgag
gacgccttcccctacgccgaaacccccgaccagctggtcaccatcgacgaggtcaaagcc
gacatggaaaagcccgtccccatggaccgcctgctcaccggcgacgtcggatacggcaag
acggaaatcgccgtgcgcgcagcgttcaaagccatccaggatggctaccaggccgccgtc
ctcgtccccacgaccctgctcgtcacccagcacgctgaaacattcgcggaacgctacgcc
ggattccccgttcgtatcggcaccctctctcgcttttcgacccgtcaggaaaccgaggag
gtgaaagcggggctggcctcgggcgaggtcgacctcgtcatcggcacgcactccctgctg
accggaaccgtctcctttaagaaactcggcctggtcatcatcgatgaggaacagcgattc
ggcgtcgagcacaaggaaaccctgaaggccctgcgcaccgacgtggacgtcctttccatg
tcggccaccccgatcccgcgcacgctcgagatggccatctccggcatccgcgaaatgtcc
atcctgcaaacaccgcccgaggaacgccagccggtcctgaccttcgtcggcgcctacacc
gacgcgcaggtcagcgccgctatccggcgcgagctgctgcgcgacggccaggtcttttac
gtgcacaaccgcgtcgactccatcgcctcaatcgccgcgggcatcggtgagctggtcccc
gaggcccgtgtgcgcaccgcccacggcaggatgaatgagcaccagcttgaggccgtcatt
caggacttttggaatcacgagttcgacgtcctcgtgtgcacgaccatcgtcgaaaccggg
ctggacatctccaacgcgaatacgctcatcgtcgaccgtgccgatacctatggcctgtcc
cagcttcaccagttgcgcgggcgcgtcgggcgaggccgcgagcgagcctacgcgtacttc
ttttaccctggcgacaaggcgctgaccgaaaccgcacacgagcggctcaagaccatcgcg
gcaaacaccgaactgggagatggactggcggttgcccagcgcgacctggagatccgtggc
gcaggcaacctgttgggaggcgcccagtccgggcacgttgagggtgttggcttcgacctg
tacgtgcgaatggtctccgacgcggtggcggcctacaggggcgaggcgcccgccgaaaag
accgacgtgcgcatggacctccaggttgacgcccacatccccgaggactacgtgcaaggg
gagcgattgcgtctggaggtctacgccaagatcgcggccatcaccaccctcgagcaggag
gcggatgtgcgggaggaactgatcgatcgctatggccccatccccgcccaggttgacctg
ctcttttccctcgcccggctgcgcgaggtcgtgcgccgcgccgggatcaccgaggtggtc
acccaggggaagtacctgcgcgtctctcccgtccagctgcgtgattcccaggtcatgcgc
ctcaagcgactgcacccgggcaccgtcatcaaggcggctctccgccaggtgctggtgccc
ctcccgctcacctcgcgcgtgggcgggagcccgctcaccgacggcccgctcctggagtgg
gtggagacgctggtgacgaagattctcgtgccttttggcgagtag
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