Amycolatopsis sp. BJA-103: BKN51_26370
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Entry
BKN51_26370 CDS
T05296
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amyb
Amycolatopsis sp. BJA-103
Pathway
amyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BKN51_26370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyb03021
]
BKN51_26370
03019 Messenger RNA biogenesis [BR:
amyb03019
]
BKN51_26370
Transcription machinery [BR:
amyb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BKN51_26370
Messenger RNA biogenesis [BR:
amyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BKN51_26370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
AUI61356
UniProt:
A0A2N8N268
LinkDB
All DBs
Position
complement(6092864..6094921)
Genome browser
AA seq
685 aa
AA seq
DB search
MSNTDLLSDVEGGAAESNGAVAPKRTVGGLTGKTVAELRSIAGDLGIGETTGMRKGDLIA
AIRERQGKTKRKTPAAASETLPLEGIDAPRKAPKAEAPKTEAPKQEAPKAEAPKAEAAPA
EAPRAEKAEKVSDNGSAPAAERPAQQENGPQDGQSQQEEGGRSRRRRGSNRAAGSPEQGG
QQRDRGEQRDRGDRGEQRDRGEQRDRGERGDRNERGDRGEQGGNRQGNRDGGRDGGRDSR
GQDSRQRNQQGGGQDNSQRQGQQGPQGDDDEEGGRRGRRFRDRRRRGTGGGREQGGSPDT
EIREDDVLLPVAGILDVLDNYAFVRTSGYLAGPNDVYVSLSLVRKYGLRRGDALTGVVRQ
PRDGEQQRQKFNPLVRVDSINGLEPDEAKRRPEFTKLTPLYPNERLRLETESHKLTTRVI
DLVMPVGKGQRALIVSPPKAGKTTIMQDIANAISTNNPECHLMVVLVDERPEEVTDMQRS
VKGEVIASTFDRPPSDHTSVAELAIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPASG
RILSGGVDSTALFPPKRFLGAARNIENGGSLTIFATTMVETGSTGDTVIFEEFKGTANAD
LKLDRKIAERRVFPAVDINPSGTRKEDLLLSPDELAVTHKLHRVLHALDSQQAIDLLISR
LRKTKTNIEFLMQVSKTALGSNDDD
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatcttttgagcgacgtcgaaggtggcgccgccgagtcgaacggcgcc
gtcgctcccaagcgcacggtcggcggattgaccggcaagaccgtcgccgaactgcgctcg
atcgctggggaccttggcatcggcgagaccacgggtatgcgtaagggcgacctgatcgcg
gccatccgtgagcgccagggcaagaccaagcgcaagacccccgccgcggcgagcgaaacg
cttccgctcgaggggatcgatgcaccacgcaaggctcccaaggccgaagcgcccaagacg
gaggccccgaagcaggaggccccgaaggccgaagcgccgaaggcggaagccgccccggcc
gaagccccgcgcgccgagaaggccgaaaaagtctcggacaacggctccgcgcccgccgcc
gagcggcccgcgcagcaggagaacgggccgcaggacggccagtcgcagcaggaagagggc
ggccgcagccgtcgtcgtcgtggctccaaccgcgccgcgggttcgcccgaacagggtggc
cagcagcgtgatcgcggtgagcagcgtgaccgcggggaccgtggcgagcagcgtgaccgc
ggcgagcagcgtgaccgtggcgagcgtggcgaccgcaacgagcgtggcgaccgcggtgag
cagggcggcaaccgtcagggcaaccgtgacggcggtcgtgacggcggtcgcgacagccgc
ggccaggacagccgccagcgcaaccagcagggcggcggccaggacaacagccagcgtcag
ggccagcagggcccgcagggtgacgacgacgaggaaggcggccgtcgcggccgtcgcttc
cgcgaccgtcgccgccggggtaccggcggtggccgtgaacagggcggttcgcccgacacc
gagatccgcgaggacgacgtcctgctgcccgtcgcgggcatcctggacgtgctcgacaac
tacgcgttcgtgcgtacctcgggctacctcgccgggccgaacgacgtgtacgtctcgctg
tcgctggtccgcaagtacggcctgcgccgcggtgacgccctcaccggtgtcgtgcgccag
ccgcgtgacggcgagcagcagcggcagaagttcaacccgctggtgcgcgtcgactcgatc
aacggcctggagccggacgaggccaagcgtcgcccggagttcaccaagctgaccccgctg
tacccgaacgagcggctgcgcctcgagaccgagtcgcacaagctcaccacccgcgtcatc
gacctggtgatgccggtcggcaagggacagcgtgccctgatcgtgtcgccgcccaaggcc
ggcaagacgacgatcatgcaggacatcgcgaacgcgatctcgacgaacaaccccgagtgc
cacctgatggtcgtgctcgtggacgagcgtcctgaagaggtcaccgacatgcagcgttcg
gtgaagggcgaggtcatcgcctcgaccttcgaccgtccgccgtccgaccacacgtcggtc
gcggagctggccatcgagcgggcgaagcggctcgtcgagatgggccacgacgtcgtcgtg
ctgctcgactcgatcacccgcctcggccgtgcgtacaacctcgcggccccggcgtccggc
cggatcctctccggtggtgtcgactcgaccgcgctcttcccgccgaagcgtttcctcggc
gcggcgcgcaacatcgagaacggcggttcgctcacgatcttcgccacgacgatggtcgag
accggatccaccggtgacacggtcatcttcgaggagttcaagggcaccgcgaacgcggac
ctcaagctcgaccggaagatcgccgagcggcgcgtcttccccgcggtggacatcaacccg
tccggtacccgcaaggaagatctgctgctttcgccggacgagctcgcggtcacccacaag
ctgcaccgggtgctgcacgcgctggactcgcagcaggccatcgacctgctgatctcgcga
ctgcgcaagacgaagaccaacatcgagttcctcatgcaggtctcgaagacggccctcggc
tcgaacgacgacgactga
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