Amycolatopsis sp. AA4: CU254_31415
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Entry
CU254_31415 CDS
T05278
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CU254_31415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
amyc03021
]
CU254_31415
03019 Messenger RNA biogenesis [BR:
amyc03019
]
CU254_31415
Transcription machinery [BR:
amyc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CU254_31415
Messenger RNA biogenesis [BR:
amyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CU254_31415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ATY14429
UniProt:
A0A2K8M1B2
LinkDB
All DBs
Position
complement(6810807..6812870)
Genome browser
AA seq
687 aa
AA seq
DB search
MSNTDLLSGDVETPAAAAETNGAAAAPKRRTGGLSGMVIAELRQLAGELGVGETTGMRKG
DLIAAIRERQGKSKKRASAPADTLPLDGVEPVKAEKPARRAKADAPKADAAKAEAPKAEP
KAEPVQAEASPAEAPKAETAQDSKPAQERPERPERSEGQSDGQSEEGGRNRRRRGGANRG
DGQRDQRGDRQGGNRDNNRDGNRDNRENRDGNRDNRDNGRDNRDNGRDNRDGNRDNRGGQ
DNRQDRQDRQDNRQRNQQDNRDNRNNGPQDDDEEGGRRGRRFRDRRRRGSGGGRAEGGAP
DTEIREDDVLLPVAGILDVLDNYAFVRTSGYLAGPNDVYVSLSLVRKFGLRRGDAITGVV
RQPREGEQQRQKFNPLVRVDSINGLEPDEAKRRPDFTKLTPLYPNERLRLETEPHKLTTR
VIDLIMPVGKGQRALIVSPPKAGKTTIMQDIANAITTNNPEAHLMVVLVDERPEEVTDMQ
RSVKGEVIASTFDRPPSDHTSVAELSIERAKRLVEMGHDVVVLLDSITRLGRAYNLAAPA
SGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIFATAMVETGSTMDTVIFEEFKGTGN
AELKLDRKISERRVFPAVDVNPSGTRKEELLLSPDELAVTHKLHRVLHALDSQQAIDLLI
SRLRKTKTNIEFLMQVSKTALGGGDDD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatctgttgagcggcgacgtggagacccccgccgcggccgctgagacc
aatggggccgcggccgctccgaagcgccgcaccgggggcctgtccggaatggtcatcgcc
gagctccgccagctggcgggcgaactgggtgtgggcgagaccaccggcatgcgcaagggg
gacctgatcgccgcgatccgcgagcgccagggcaagagcaagaagcgcgcctccgcgccc
gccgacacgctgccgctcgacggcgtcgagccggtcaaggccgagaagcccgcccgccgg
gccaaggccgacgcgccgaaggcggacgccgccaaggccgaggcccccaaggcggagccg
aaggccgagccggtccaggcggaggcttccccggccgaggccccgaaggcggagaccgcg
caggacagcaagcccgcgcaggagcggccggagcgccccgagcgttccgagggccagtcc
gacggccagtccgaggagggcggccgcaaccgccgtcgccgcggcggagccaaccggggc
gacggccagcgcgaccagcgcggcgaccgccagggcggcaaccgcgacaacaaccgggac
ggcaaccgcgacaaccgcgagaaccgcgacggcaaccgcgacaaccgggacaacggccgc
gacaaccgggacaacggccgcgacaaccgcgacggcaaccgggacaaccgcggcggccag
gacaaccgccaggatcgccaggaccggcaggacaaccggcagcggaaccagcaggacaac
cgcgacaaccggaacaacggcccccaggacgacgacgaggaaggcggccgccgcgggcgc
cgcttccgcgaccgccgccgccggggcagcgggggcggccgcgccgagggcggcgcgccg
gacaccgagatccgcgaggacgacgtcctgctgccggtcgccggcatcctggacgtgctc
gacaactacgcgttcgtgcgcacctcgggctacctggccgggccgaacgacgtgtacgtg
tcgctgtcgctggtccgcaagttcggcctgcgccgcggcgacgcgatcaccggtgtcgtg
cgccagccgcgcgagggcgagcagcagcggcagaagttcaacccgctggtgcgcgtcgac
tcgatcaacggcctggagccggacgaggccaagcgccgtccagacttcaccaagctgacg
ccgctgtacccgaacgagcgactgcgtctcgagaccgagccgcacaagctcaccacccgc
gtgatcgacctgatcatgccggtcggcaagggccagcgtgcgctgatcgtgtccccgccc
aaggccggcaagaccacgatcatgcaggacatcgcgaacgcgatcaccacgaacaaccct
gaggcccacctcatggtcgtgctggtcgacgagcgtccggaagaggtcaccgacatgcag
cggtcggtgaagggcgaggtcatcgcctcgaccttcgaccgcccgccgtccgaccacacc
tcggtcgccgagctgtccatcgaacgggccaagcgcctggtcgaaatgggccacgacgtg
gtcgtcctgctcgactcgatcacccgtctgggccgcgcgtacaacctggccgcgccggcg
tccggccggatcctgtccggtggtgtcgactcgaccgcgctgtacccgccgaagcgtttc
ctcggcgccgcgcgcaacatcgagaacggcggctcgctcaccatcttcgcgaccgcgatg
gtggagaccgggtccacgatggacacggtgatcttcgaggagttcaagggcaccggcaac
gcggagctcaagctcgaccgcaagatctccgagcgccgcgtgttcccggcggtggacgtc
aacccgtccggcacccgcaaggaagagctgctgctctcgccggacgagctggccgtcacg
cacaagctgcaccgcgtgctgcacgcgctggactcgcagcaggccatcgacctgctgatc
tcgcggctgcgcaagacgaagaccaacatcgagttcctgatgcaggtctcgaagaccgcc
ctcggcggtggagacgacgactga
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