Amycolatopsis sp. AA4: CU254_33720
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Entry
CU254_33720 CDS
T05278
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amyc
Amycolatopsis sp. AA4
Pathway
amyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CU254_33720 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyc03400
]
CU254_33720 (mfd)
Enzymes [BR:
amyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CU254_33720 (mfd)
DNA repair and recombination proteins [BR:
amyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CU254_33720 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ATY16780
UniProt:
A0A2K8MBV6
LinkDB
All DBs
Position
complement(7313410..7316970)
Genome browser
AA seq
1186 aa
AA seq
DB search
MSGLLQAILPDPALRGVVERAGAPLLELQGAVAVRQLVAAALAEDPERGGAGRPVLAVTA
TGREADELTASLSALLGPDRVADFPSWETLPHERLSPRADTVGRRLEVLHRLHTGDEQLR
VVVATVRSLIQPMAPGLGSLAPIDLVVGEEQSFEDLLERLVELAYTRVDMVEKRGEFAVR
GGILDLFGPTAQHPVRVEFWGDEVSEIRAFAVSDQRSLPGEIQRVTAPPCRELLLTPDVK
ARAAELATTYEADAHLAEMLTKLSGGVPVEGMEALIPVLCEGELALLTDAMPQGSHVLLA
DPEKIRARAADLVRTGQEFLEASWTTAAAGGQAPIDLGASAYRELSEIASHAQETKRPWW
TLTQLTSEDPDVYRVGIEPAPAYRGELERAMTDLRAHLAAGGTGVLVVAGQGTASRAVEQ
LMAAEVPAKHVEVLSDVPPAGVVTVTCGGLAEGFVSPERALVVLSEADLTGRGATAGSST
KDLNTKMPSRRRGAVDPLALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEYASSK
RGQPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKARAKKAVKEIAAELVQLYA
ARQAAPGHAFGPDTPWQSELEDAFPFTETNDQLAAIDEVKADMERGVPMDRVICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLNTFTERMRSFPVTIKGLSRFTHKAESD
RILEQLADGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLT
MSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVGAAVRRELLRDGQVF
YVHNRVSSIEKAAKRIRELVPEARVVTAHGQMNEDKLEKIIQGFWENEYDVLVCTTIVET
GLDISNANTLIVERGDMLGLAQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATI
AQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGAE
PAEDEELAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIASAPDTAALDAVREELVDRYGQ
PPAPVTRLLAVAAFRHACRAAGVTEVAAQGNTIRFAPLPLMDSQLVRLKRLYPKAMYKAI
TNTVSVPKPTEGPAGGRMGAPVLRDQELLDWCTKLLAQLTKTPAAV
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggactcctccaagccatccttcccgacccggcgctgcgcggcgttgtcgagcgc
gccggcgccccgctgctcgaactgcaaggcgctgtcgccgtacggcagctcgtcgccgcc
gcgctggccgaagaccccgagcgcggcggtgcgggccgtccggtgctggccgtcaccgcg
accgggcgcgaggccgacgagctgaccgcgtcgctcagcgcgctgctcggccccgatcgc
gtggccgacttcccctcctgggagacgctgccgcacgagcgcctttccccgcgcgcggac
acggtcggccggcggctggaagtgctgcaccgcctgcacaccggcgacgagcagctgcgg
gtcgtggtcgcgaccgtccgcagcctcatccagccgatggctcccgggctcggttcgctc
gcgccgatcgacctcgtcgtcggcgaggagcagagcttcgaggacctgctcgaacggctt
gtcgagctggcctacacgcgcgtggacatggtcgagaagcgcggcgagttcgcggtccgc
ggcggcatcctcgacctgttcgggcccaccgcgcagcatccggtccgcgtcgagttctgg
ggcgacgaggtcagcgagatccgcgcgttcgcggtgtccgaccagcgttcgctgcccggc
gagatccagcgggtcaccgcgccgccgtgccgggaactgctgctcacgccggacgtcaag
gcgcgcgcggcggagctggccaccacctacgaggccgacgcgcacctggcagaaatgctc
accaagctctccggcggcgtcccggtcgagggcatggaagcgctcatcccggtgctctgc
gagggcgaactggccctgctcaccgacgcgatgccgcagggcagccacgtcctgctggcc
gacccggagaagatccgcgcccgcgcggccgacctcgtccgcaccgggcaggagttcctc
gaggcctcctggaccaccgccgcggcgggcgggcaggctccgatcgacctcggcgcgtcg
gcgtaccgcgagctgtccgagatcgcgtcgcacgcgcaggagacgaagcgtccgtggtgg
acgctcacccagctgaccagcgaagacccggacgtctaccgcgtcggcatcgagcccgcg
cccgcctaccggggcgagctggaacgcgcgatgaccgacttgcgcgcgcacctcgcggcc
ggcggcaccggcgtgctcgtcgtcgccggacagggcaccgccagccgcgcggtcgagcag
ctgatggcggccgaggtaccggcgaaacacgtcgaggtgctctccgacgtgccgccggcc
ggggtcgtcacggtcacctgcggcgggctcgcggagggcttcgtctcgccggagcgcgcg
ctcgtggtgctgtccgaggccgacctcaccggccgcggcgccaccgctggatcgtccaca
aaggacttgaacaccaagatgccgtcgcgccgccgcggcgcggtcgacccgctggcgctc
aaggcgggcgactacgtggtgcacgaccagcacggcatcggccggttcgtggaaatggtg
cagcgcacggtcgccggcgcgacccgcgagtacctgctgctcgagtacgcgtcgtccaag
cgcggccagcccggcgaccggctgttcgtgcccaccgaccagctcgacgaggtgtcccga
tacgtcggcggcgaattgcccacgctcaacaagctcggcggttcggactggaagaacacc
aaggcccgcgccaaaaaggcggtcaaggagatcgccgccgagctggtgcagctctacgcc
gcccggcaagccgcgcccggccacgcgttcggaccggacacgccgtggcagtccgagctg
gaagacgcgttcccgttcaccgagaccaacgaccagctcgcggccatcgacgaggtcaag
gcggacatggagcgcggcgtcccgatggaccgcgtgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaaacaggtcgcc
gtgctcgtgccgaccacgctgctcgcgcagcagcacctgaacacgttcaccgaacgcatg
cggtcgttcccggtcaccatcaagggcctttcgcggttcacgcacaaggcggaatcggac
cggatcctcgaacagctcgccgacggcgaggtcgacatcgtcatcggcacgcaccggctg
ctgcagaccggtatccgctacaaggacctcggcctcgtgatcgtcgacgaggagcagcgg
ttcggcgtggagcacaaggaacacatcaaggcactgcgcacgcacgtcgacgtgctcacc
atgtcggccacgccgatcccgcgcacgctcgaaatgtcgctggcgggcatccgcgagatg
tcgaccatcctcacgccgccggaagaccggcacccgatcttgacctacgtcggcgcgtac
gacgacaagcaggtcggcgccgcggtccggcgcgagctgctgcgcgacggccaggtgttc
tacgtgcacaaccgggtgtcgtcgatcgagaaggcggcgaaacggatccgcgagctggtg
ccggaggcgcgcgtcgtcaccgcgcacgggcagatgaacgaggacaagctcgaaaagatc
atccagggcttctgggagaacgagtacgacgtcctcgtctgcaccacgatcgtcgagacc
ggcctggacatctccaacgccaacacgctgatcgtcgagcgcggcgacatgctcggcctc
gcccagctccaccagctgcgcggccgggtcgggcgcggccgcgagcgcgggtacgcgtac
ttcctgtacccgccggaagcgccgctcaccgagacggcgcacgaccggctcgccaccatc
gcgcagaacaccgaactcggcgcgggcatggcggtcgcgatgaaggacctcgaaatccgc
ggcgcgggcaacatcctcggcgcggaacagtccgggcacatcgcgggcgtcgggttcgac
ctgtacgtccggctcgtcggcgaagcggtcgaggcgttccggcggcacgcgggcgcggag
ccggcggaggacgaggaactggccgaagtccgcgtcgacctgccggtggacgcgcacatc
ccgcacgactacgtccccggcgaacggctgcggctggaggcgtaccgcaagatcgcctcg
gcccccgacaccgcggcgctcgacgcggtgcgcgaggaactggtcgaccgctacggccag
ccgcccgccccggtcacgcgcctgctcgcggtcgcggcgttccggcacgcctgccgcgcc
gccggcgtcaccgaggtcgcggcgcagggaaacacgatccggttcgcgccgctgccgttg
atggactcgcagctggtgcggctgaaacgcttgtaccccaaggcgatgtacaaggcgatc
accaacacggtgtcggtgccgaagccgaccgaaggccccgcgggcggccggatgggcgcg
ccggtgctgcgggaccaggaactgcttgactggtgcacgaagctgttggcgcagctgacg
aaaaccccggcggcggtgtga
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