Amycolatopsis sp. YIM 10: YIM_01445
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Entry
YIM_01445 CDS
T06270
Symbol
ykoU1
Name
(GenBank) putative ATP-dependent DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
YIM_01445 (ykoU1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_01445 (ykoU1)
Enzymes [BR:
amyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YIM_01445 (ykoU1)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
YIM_01445 (ykoU1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QFU85521
UniProt:
A0A5P9PBB9
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Position
complement(295703..297529)
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AA seq
608 aa
AA seq
DB search
MKVQREPMLATLSDRPFTDPNWIFERKLDGVRALIVREGGGEPQLWSRNQKLMNGAYPEI
VEALAEQGGPDFVADGEVVAFDDQGHTSFARLQHRMHLRDPKASMATGIEVFLYVFDLLA
FGGMEATSLPLRQRKQLLADAFDFDDPLRLSEHRDTEGEKFLAEARDEGWEGLIAKRADA
PYRAGRSSDWLKLKCVREQEVVVGGYTDPTGTRAGFGALLAGYYEGDVLRYAGKIGTGFD
QRTLRELHERLRELSRPDSPFTGEVPERRPHWVEPELVVQAGFAEWTSDGRMRHARYLGL
RTDKAPREVESEMPALDVKTTRLDKVYYPADGVTKGEVIEHYRTVAEAMLPHLRGRPLTM
RRYPHGVGGENWFQKEAPSHWPDWMRTEDVPQHDGGGTTRHVFAEDPATLVYLANQAALE
FHIWTSSWDTLDHPDLVVIDIDPPNGTAVDSLREVARAVRELYKAVGLTAYVQATGGRGY
HVVAPLDRQSPHETVVSFAREAADFLASKAPAMLTTEFRKNKRGKRIFLDTARNGYAQTF
VAPYSLRGRAGARVATPLDWDELGRTEPDGYDIPKLRRRLAQKEDPWQDMHEHAGSAEEA
GAQLAEFS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtccagcgtgagccgatgctggccacgctgtccgaccgcccgttcaccgatccg
aactggatcttcgaacggaagctggacggcgtacgggcgctgatcgtccgggaaggcggc
ggcgagccgcagctgtggtcgcgcaaccagaagctgatgaacggcgcctacccggagatc
gtcgaagcgctggccgagcagggcggaccggacttcgtcgccgacggcgaggtggtggcc
ttcgacgaccagggccacaccagcttcgcgcgcctgcagcaccggatgcacctgcgtgat
ccgaaggcctcgatggccaccgggatcgaggtcttcctgtacgtgttcgacctgctggcc
ttcggcggcatggaggccaccagcctgccgctgcgccagcgcaagcagctgctcgccgac
gcgttcgacttcgacgacccgctgcggttgtccgagcaccgagacaccgagggtgagaag
ttcctcgccgaagcccgcgacgagggctgggaggggctgatcgccaaacgcgccgacgcg
ccgtaccgcgccggacggtcctccgactggctgaagttgaagtgcgtgcgcgagcaggag
gtggtggtcggcgggtacaccgacccgaccgggacgcgggctgggttcggcgcgctgctg
gctgggtactacgaaggcgacgtgctccggtacgccggcaagatcggcaccggtttcgac
cagcgcacgctgcgcgagttgcacgagcggttgcgggaactgtccaggccggactccccg
ttcaccggcgaggtgcccgagcggcggccgcactgggtcgagccggagttggtggtgcag
gcggggttcgcggagtggacctcggacggccggatgcggcacgcccggtacctcgggctg
cgcacggacaaggcaccgcgggaggtggagagcgagatgccggcactggacgtgaagacc
acgcgcctggacaaggtgtactacccggccgacggggtgaccaagggcgaggtgatcgag
cactaccggaccgtggccgaggcgatgctgccgcacctgcgcggccgtccgctgaccatg
cgccgctacccgcacggcgtcggcggcgagaactggttccagaaggaagcgccgtcgcac
tggccggactggatgcgcaccgaggacgtcccgcagcacgacggcggcggcaccacgcgc
cacgtgttcgccgaggacccggcgaccctggtctacctggcgaaccaggccgcactggag
ttccacatctggacctccagctgggacacgttggaccacccggacctggtggtgatcgac
atcgacccgccgaacgggaccgcggtggactcgctgcgggaggtcgcgcgggcggtgcgc
gagctgtacaaggcggtcggcctgaccgcgtacgtgcaggccaccggcggtcgcgggtac
cacgtggtggctccgctggatcgccagagtccacatgagaccgtcgtgtccttcgcccgc
gaggcggcggacttcctggcctcgaaggcaccggccatgctcaccacggagttccggaag
aacaagcgcggcaagcgcatcttcctggacacggccaggaacgggtacgcgcagaccttc
gtcgcgccctattcgctgcgcggacgggccggcgccagggtggccaccccgctcgactgg
gacgagcttggccggaccgaaccggacggctacgacatcccgaagctgcgccgccgcctg
gcgcagaaggaagacccctggcaggacatgcacgagcacgcgggctcggccgaggaggcc
ggcgcgcagctcgccgagttcagctga
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