Amycolatopsis sp. YIM 10: YIM_04770
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Entry
YIM_04770 CDS
T06270
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
amyy
Amycolatopsis sp. YIM 10
Pathway
amyy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
amyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YIM_04770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amyy03400
]
YIM_04770 (mfd)
Enzymes [BR:
amyy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YIM_04770 (mfd)
DNA repair and recombination proteins [BR:
amyy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YIM_04770 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFU86173
UniProt:
A0A5P9PDC3
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All DBs
Position
947764..951336
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AA seq
1190 aa
AA seq
DB search
MSDAVLSGLVESTLSGSALRPVLERAGAPLLELQGPTAARQLVAAVLAAPGGAGRPVLAV
TATGREADELTSALSAMLGRDAVADFPSWETLPHERLSPRADTVGRRLEVLHRLNGSDQG
GLRVVVATVRSLIQPMAPGLGTLAPVELVVGEEQEFEGVLERLVELAYTRVDMVEKRGEF
AVRGGILDVFPPTAEHPHRVEFWGDEVSEIRAFAVSDQRSLPGEIAAVVAPPCRELLLTP
EVKARAAELAQTHAADAQLAEMLTKLADGIPCEGMEALIPVLCAGELELLTDAMPAGTHV
LLADPEKIRARAHDLVRTGQEFLEASWTTAAVGGSAPIDLGASAYRDLTEVAAHAQDTKR
PWWTLSQLTTEGEDVVHVAAEAAPAYRGEFERAITDLRAHTASGGAAVVVVAGHGTASRV
TEQLGAAEVPARQVDRLEKAPETGFVTITCGGLADGFVLPEQALVVLSEADLTGRGAGAG
TSTRDLNTKMPSRRRNAVDPIALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEYA
SSKRGHPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKEIAAELVQ
LYAARQAAPGHAFGPDTPWQAELEDAFPFTETNDQLAAIDEVKTDMERGVPMDRVICGDV
GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFAERMQSFPVTIKGLSRFTSKT
ESDLVLEGLAAGEVDIVIGTHRLLQTGIRYKDLGLVIVDEEQRFGVEHKEHIKALRTHVD
VLTMSATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGGYDDKQVGAAIRRELLRDG
QVFYVHNRVSTIEKAAKRIRELVPDARVAVAHGQMNEDKLEHLIEGFWAREFDVLVCTTI
VETGLDISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPAEAPLTETAHDRL
ATIAQNTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDVFRRSA
GAEPLEDEAPAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAATDAAALDAVREELVDR
YGQPPASVGRLLAVARFRHACRAAGVTEVSTQGNSIRFAPLPLADSQLVRLKRLYPKAMY
KAVTHTVSVPKPTEGPAGGRMGAPQLRDEPLLDWCTKLLESLAKAPAAVG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacgccgttttgtccggtctcgtcgagtccaccctgtccggctccgcgctgcgc
cccgtgctggagcgcgccggtgccccgttgctcgaactccaggggccgacggcggccagg
cagctggtcgcggccgtgctcgccgcgccgggcggggccgggcggccggtgctcgcggtc
accgccaccggccgcgaggccgacgagctgacctccgcgctctcggcgatgctcggccgg
gacgcggtcgccgacttcccctcgtgggagacgctgccgcacgagcggctctcgccgcgc
gcggacaccgtcggccgccgcctcgaggtgctgcaccggctcaacggctctgatcagggc
ggtctgcgcgtggtggtggccacggtccgcagcctgatccagccgatggcgcccggcctc
ggcacgctggccccggtcgagctggtcgtcggtgaggagcaggagttcgagggcgtgctc
gagcgcctggtcgagctggcctacacccgggtcgacatggtggagaagcgcggggagttc
gccgtgcgcggcggcattctcgacgtgttcccgccgaccgccgagcatccgcaccgcgtc
gagttctggggcgacgaggtcagcgagatccgcgcgttcgcggtgtcggaccagcggtcg
ctgcccggtgagatcgccgccgtggtcgcgccgccgtgccgcgagctgctgctcaccccg
gaggtcaaggcccgcgccgccgagctggcccagacccacgccgcggacgcccagctggcc
gagatgctcaccaagctcgccgacggaatcccttgcgagggaatggaagcgctcatcccg
gtgctgtgcgccggcgagctggagctgctcaccgacgcgatgcccgccggtacgcacgtg
ctgctcgccgacccggagaagatccgcgcgcgggcacacgacctggtccgcaccgggcag
gagttcctcgaagcgtcgtggaccacggcggccgtcggcggttcggcgccgatcgatctc
ggcgcctcggcctaccgcgacctgaccgaggtggccgcgcacgcgcaggacaccaagcgc
ccgtggtggacgctgtcgcagctgaccaccgagggcgaggacgtggtgcacgtcgcggcc
gaggccgcgcccgcctaccgcggtgagttcgagcgcgcgatcaccgatctgcgcgcgcac
accgcgagcggtggcgcggcggtggtcgtggtcgccgggcacggcacggccagccgcgtg
accgagcagctcggcgccgccgaagtgcccgcgcgccaggtggaccggctggagaaggca
ccggagaccggcttcgtgacgatcacctgcggtggtctcgccgacgggttcgtgctgccg
gagcaggcgctggtggtgctcagcgaggcggacctgaccgggcggggcgccggcgccgga
acgtccacaagggacctcaacaccaagatgccgtcgcggcgccgcaacgcggtcgacccg
atcgcgctcaaggccggcgactacgtggtccacgaccagcacggcatcggccggttcgtg
gagatggtgcagcgcaccgtcgccggggccacccgcgagtacctgctgctggagtacgcc
tcgtccaagcgcggccaccccggcgaccggttgttcgtgccgaccgaccagctcgacgag
gtctcccgctacgtcggcggtgagctgccaacgctgaacaagctcggcggctccgactgg
aagaacaccaaggccaaggcacgcaaggcggtcaaggagatcgccgccgagctggtgcag
ctctacgccgcccgccaggccgcgcccggccacgccttcggcccggacacgccgtggcag
gccgagctggaggacgccttcccgttcaccgagaccaacgaccagctcgccgcgatcgac
gaggtcaagaccgacatggaacgcggcgtcccgatggaccgggtgatctgcggtgacgtc
ggttacggcaagaccgagatcgccgtgcgcgcggcgttcaaggcggtgcaggacggcaag
caggtggccgtgctggtgccgaccacactgctcgcgcagcagcacctgagcaccttcgcc
gagcgcatgcagtcgttcccggtgaccatcaagggcctgtcgcggttcacctcgaagacc
gagtcggacctggtgctcgaaggcctcgccgccggtgaggtggacatcgtcatcggcacg
caccgcctgctgcagaccggcatccgctacaaggacctcggcctggtgatcgtggacgag
gagcagcggttcggcgtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtcgac
gtgctgaccatgtcggccaccccgatcccgcgcacgctggagatgtcgctggccggcatt
cgcgagatgtccaccattctcaccccgcccgaggacaggcacccgatcctgacctacgtc
ggcggttacgacgacaagcaggtcggcgccgccatccgccgcgagctgctccgcgacggc
caggtcttctacgtgcacaaccgggtgtcgacgatcgagaaggccgccaagcggatccgc
gagctggtgcccgacgccagggtcgcggtcgcgcacgggcagatgaacgaggacaagctc
gagcacctcatcgagggtttctgggcgcgtgagttcgacgtgctggtgtgcacgacgatc
gtggagaccgggctggacatctccaacgcgaacacgctgatcgtcgagcgcggcgacctg
ctcggcctggcccagctgcaccagctgcgcgggcgcgtcgggcgcgggcgcgagcgcggg
tacgcgtacttcctgtacccggcggaggcgccgctcaccgagaccgcgcacgacaggctg
gccaccatcgcgcagaacaccgaactcggcgcgggcatggcggtcgcgatgaaggacctg
gagatccgcggcgccggcaacatcctgggcgccgagcagtccgggcacatcgcgggcgtc
ggcttcgacctgtacgtgcggctggtcggcgaggcggtggacgtgttccgccgcagcgcg
ggcgcggagccgctggaggacgaggcacccgccgaggtgcgggtggacctgccggtggac
gcgcacatcccgcacgactacgtgcccggcgagcggctgcgcctggaggcgtaccgcaag
atcgccgccgccaccgacgccgccgcgctggacgcggtgcgcgaggaactggtcgaccgg
tacgggcagccgcccgcgtcggtgggtcgtctgctggccgtggcgcggttccggcacgcg
tgccgggcggccggcgtgaccgaggtgtccacccagggcaacagcatccgattcgccccg
ctgccgctggcggattcgcaactggtgcggttgaagcgcttgtaccccaaggcgatgtac
aaggcggtgacgcacacggtgtcggtgccgaagccgaccgagggcccggcgggcgggcgg
atgggcgcgccgcagctgcgtgacgaaccgctgctggactggtgcacaaaactgctggag
tcgctggcgaaggcaccggccgcggtcggttga
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