Amycolatopsis mediterranei RB: B737_3795
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Entry
B737_3795 CDS
T02804
Symbol
gabD
Name
(GenBank) succinate-semialdehyde dehydrogenase (NADP+)
KO
K00135
succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:
1.2.1.16
1.2.1.79
1.2.1.20
]
Organism
amz
Amycolatopsis mediterranei RB
Pathway
amz00250
Alanine, aspartate and glutamate metabolism
amz00310
Lysine degradation
amz00350
Tyrosine metabolism
amz00650
Butanoate metabolism
amz00760
Nicotinate and nicotinamide metabolism
amz01100
Metabolic pathways
amz01120
Microbial metabolism in diverse environments
Module
amz_M00027
GABA (gamma-Aminobutyrate) shunt
amz_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
amz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
B737_3795 (gabD)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
B737_3795 (gabD)
00310 Lysine degradation
B737_3795 (gabD)
00350 Tyrosine metabolism
B737_3795 (gabD)
09108 Metabolism of cofactors and vitamins
00760 Nicotinate and nicotinamide metabolism
B737_3795 (gabD)
Enzymes [BR:
amz01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.1 With NAD+ or NADP+ as acceptor
1.2.1.16 succinate-semialdehyde dehydrogenase [NAD(P)+]
B737_3795 (gabD)
1.2.1.20 glutarate-semialdehyde dehydrogenase
B737_3795 (gabD)
1.2.1.79 succinate-semialdehyde dehydrogenase (NADP+)
B737_3795 (gabD)
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Motif
Pfam:
Aldedh
Motif
Other DBs
NCBI-ProteinID:
AGT84459
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All DBs
Position
complement(4179776..4181209)
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AA seq
477 aa
AA seq
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MSSHPEPRMLVDGRWTRGSGRETRPVENPVTGEILTELPVATIEDLDEALDAARRAFPGW
RRTSPVERSRVLREGARLIRERAGDVAMVITLELGKPLAESRAEVLLAAEHLEWAAEEAR
RGYGRVIPARDPDTLQHTVLEPVGVVAAFAPWNAPAVTPSRKIGGALAAGCSMILKPAEE
TPTAALMMAAALQEAGLPDGVLNVVFGDPPMIGRHLVTSPIVQAVTFTGSTAVGAELHAL
GAPSMTRMTMELGGHAPVLVLADADVATVARSAVPACYRNSGQVCTSPTQFLVHTDVYDR
FLTAFVDAVRARKVGDGLADGVQMGPVATGRRLQALTEMTADARARGAVVETGGERIGDI
GWFFAPTVLTSVPPDSLAGSVEPFGPLKTVTPFDDLDAALAEANRLPFGLASYAWTHDSR
AAARIAGELEAGSVALNSWRPSLPETPFGGFHLSGVGTEGGAEGLRGFQRIKYVSRS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgcaccccgaaccccggatgctcgtcgacggccgctggacccgcggttccggg
cgggagacccgcccggtcgagaatccggttaccggcgaaatcctcaccgaattgcccgtc
gccaccatcgaggatctcgacgaggcactggacgccgcgcgccgggcgttccccggctgg
cgccggacctcgccggtcgagcggagccgcgtgctgcgcgagggcgcccggctgatccgc
gagcgggccggtgacgtcgccatggtcatcacgctggagctgggcaagccgctggccgag
tcccgcgccgaggtgctgctggccgccgagcacctcgagtgggcggccgaggaggcccgg
cgcggctacggccgggtcatcccggcccgggacccggacaccctgcagcacaccgtgctc
gagcccgtcggtgtggtggccgcgttcgcgccgtggaacgcacccgcggtgaccccgtcg
cgcaagatcggtggcgcgctggccgccggctgctcgatgatcctcaaaccggccgaagag
accccgacggcggcgctgatgatggcggcggccctgcaggaagccgggctgcccgacggc
gtgctgaacgtggtcttcggcgatccgccgatgatcgggcggcacctggtgacctcgccg
atcgtgcaagcggtgaccttcaccggatccaccgcggtcggcgccgagctgcacgcgctg
ggcgcgccgtcgatgacccggatgaccatggagctcggcggccacgccccggtgctggtg
ctcgccgacgccgacgtggcgacggtcgcccgctcggccgtcccggcctgctaccgcaac
tccggccaggtgtgcacttccccgacgcagttcctcgtccacacggacgtctacgaccgg
ttcctgaccgcgttcgtcgacgcggtccgcgcccgcaaggtcggcgacgggctggccgac
ggtgtccaaatgggacccgtcgcgaccggacggcggctccaagccttgaccgaaatgacc
gccgacgcccgggcccgtggtgccgttgtggagaccggcggagagcggatcggcgacatc
gggtggttcttcgccccgaccgtgctgacgtcggtcccgccggactcgctcgcgggctcg
gtcgagccgttcggcccgctcaagaccgtgaccccgttcgacgacctcgacgcagcactg
gccgaggccaaccggctgcccttcgggctggcgtcctacgcgtggacccacgactcccgc
gcggcggcccgcatcgccggcgagctggaagccgggtcggtggcgctcaacagctggcgg
ccgtccctgccggaaaccccgttcggcgggttccacctcagcggcgtcggcaccgagggc
ggtgccgagggcctgcgcggcttccagcggatcaagtacgtgagccgcagctga
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