Ancylobacter sp. TS-1: GBB76_03940
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Entry
GBB76_03940 CDS
T06239
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
anc
Ancylobacter sp. TS-1
Pathway
anc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
anc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GBB76_03940 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anc03400
]
GBB76_03940 (mfd)
Enzymes [BR:
anc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GBB76_03940 (mfd)
DNA repair and recombination proteins [BR:
anc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GBB76_03940 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
SecA_DEAD
UB2H
AAA_25
AAA_16
RecG_dom3_C
DUF4410
Motif
Other DBs
NCBI-ProteinID:
QFR32331
UniProt:
A0A5P8MUV8
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All DBs
Position
815617..819129
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AA seq
1170 aa
AA seq
DB search
MKTPLSALATRLAPGRTLTLANVPSGMEGLVVADLARALAAQDDAPWPTLVVICRDTERM
AELERALGFFAPGVEVLPFPAWDCLPYDRASPNAAVIARRMTTLARLARVKGREAGSIVL
TTVNSVLQRVPKRALVATQSFSAAPGNALSLDEVVGWAEINGFQRTSTVRDTGEYAVRGG
IVDLFPPGLPAPVRLDFFGDTLESIRSFDPETQRTAAQMRALDLVPMSELQLTTESMRRF
RMAYVAAFGAAQRGDLLYEAVSEGRRYPGMEHWLPLFHDGLDTLFDYAPNAPVVMEAQGN
EAATSRLDQIADYFDARRHGMEHGGGAPYKPLPPDALYLTAEEWEARERAARIIAITGFA
LPESKDVLDLGGRPARSFAPERADPEAPLFDVAAEYLRETAKTKRTILAAWSDGSRDRLS
TVLADHGLKGTQTVGSRDAADTLPKGTIALAVLGIETGFETDQLVVIGEQDILGDRLVRP
KRKARRPQDVIAELTSLTAGDLVVHVDHGIGRFIGLKTIEAMGAPHDCLEIHYAEGSKLF
LPVENLELLSRYGSEDTEAQLDRLGGGGWQARKARMKSRIREMAAELIKVAAQRQTQEAP
RLVPAAGLYDEFRARFPYEETEDQEAAIEAVFDDLGSGHPMDRLVCGDVGFGKTEVALRA
AFAVALNGKQVAVVVPTTLLARQHFKTFTERFKGLPVIVRQASRLVTGKELSETKKGLAD
GTVDIVVGTHALLGKAIAFKDLGLVIVDEEQHFGVGHKERLKQMRAEVHVLTLTATPIPR
TLQLAMTGVRELSIIASPPVDRLAVRSFVTPFDPLIVREALLRERYRGGQSFYVVPRIED
LAEVKDFLDKNVSEVRVAVAHGQMAATQLEDIMSAFYDGQFDVLLSTTIVESGLDIPTAN
TLIVHRADMFGLAQLYQLRGRVGRSKTRAYAIFTLPAQKTITAQADRRLKVLQSLDTLGA
GFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQEMLEEAIANLKAGITAPVADKWSPT
ISIGTPVLIPEDYVADLHVRLTLYRRLADLETDAEIESIGAELVDRFGPLPEEVEQLLKL
VSIKALCRRANVEKVDAGPRGMVLTFRDGRFPNPAGFIAYVGKPHVVAKMRPDGKVVFSE
DWPDATARLRGSAGILKELAKIAEQGARAA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccccgctttccgccctcgccacccgccttgccccgggccggacgctgacgctc
gccaatgtgccctccggcatggaagggctggtggtcgccgacctcgcccgcgcgctggcg
gcgcaggacgacgccccctggccgacgctggtcgtcatctgccgcgacaccgagcgcatg
gcggagctggagcgcgcgctcggcttcttcgcgccgggcgtcgaggtgctgccgttcccg
gcgtgggactgcctgccctatgaccgcgcctcgcctaacgccgccgtcatcgcgcgccgc
atgacgacgctggcgcgcctcgcccgggtgaaggggcgcgaggctggcagcatcgtgctg
accacggtcaattcggtgctccagcgcgtgccgaagcgcgccctcgtggccacacagtcg
ttctcggcggcgccgggcaatgcgctgtcgctcgacgaggtggtcggttgggccgagatc
aacggcttccagcgcacctccaccgtgcgcgacaccggcgaatatgcagtgcgcggcggc
atcgtcgacctgttcccgccgggacttccggcgccggtgcggctcgacttcttcggcgac
acgctggaatccatccgctccttcgatcccgagacccagcgcacggccgcgcagatgcgc
gcgctcgacctcgtgccgatgagcgaattgcagctcaccacggaatcgatgcgccgcttc
cgcatggcctatgttgccgccttcggcgccgcccagcggggcgatctgctctatgaggca
gtgagcgaaggtcggcgctatccgggcatggaacactggctgccgctgttccatgacggg
ctcgacaccctgttcgactacgcccccaacgcgccggtcgtgatggaggcgcagggcaac
gaggcggcaacttcgcggctcgaccagatcgccgactatttcgacgcccgccggcacggg
atggagcatggcggcggcgcgccctacaagccgctgccgcccgacgcgctctacctcacc
gccgaggagtgggaggcccgcgagcgggcggcgcgcatcatcgccatcaccggcttcgcc
ctgccggaatcgaaggatgtgctcgatctcggcggtcggccggcccgctccttcgcgccc
gagcgcgccgacccggaggcgccgctcttcgacgtcgccgcggagtatctgcgcgaaacc
gcgaagacgaagcgcaccattctcgccgcctggtcggacggctcgcgcgaccgactgtct
accgtgctcgccgatcacggcctcaagggcacgcagacggtgggctcgcgcgatgccgcc
gacacgctgcccaaggggaccatcgccctcgccgtgctcggcatcgagaccggcttcgag
acggatcagctcgtcgtcatcggcgagcaggacattctcggcgaccgtctggtgcggccc
aagcgcaaggcgcgccgcccgcaggacgtgatcgccgaactgacttcgctgaccgccggc
gatctcgtggtgcatgtcgaccacggcatcggccgcttcatcgggctcaagaccatcgag
gcgatgggcgccccgcacgactgcctggaaatccactacgcggaaggctccaagctgttc
ctgccggtggagaacctcgaactgctctcgcgctacggttccgaggacaccgaggcgcag
ctcgaccggctgggcggcggcggatggcaggcgcgcaaggcgcgcatgaagagccgcatc
cgcgagatggcggccgagctcatcaaggtcgccgcgcagcgccagacgcaggaagcgccg
cgcctcgtcccggccgccggcctctatgacgaattccgcgcccgcttcccctatgaggaa
accgaggatcaggaagccgccatcgaggcggtgttcgacgatctcggctccggccatccg
atggaccggctggtgtgcggcgatgtcggcttcggcaagaccgaggtggcgttgcgcgcc
gccttcgccgtcgcactcaacggcaagcaggtggcggtggtggtgccgacaacgctgctg
gcccgccagcatttcaagaccttcaccgagcggttcaagggcctgccggtcatcgtgcgt
caggcctcgcgcctcgtcactggcaaggagctttcagagaccaagaagggccttgccgac
ggcacggtcgatatcgtggtcggaacccatgcgctgctcggcaaggcgatcgcgttcaag
gatctcggccttgtcatcgtcgacgaggagcagcatttcggcgtcggccacaaggagcgg
ctgaagcagatgcgcgccgaggtgcatgtgctgaccctcacggccacgccgattccgcgc
acgctgcagctcgccatgaccggggtgcgcgaactctccatcatcgcctcgccgccggtt
gaccgcctcgcggtgcgcagtttcgtgacgccgttcgacccgctgatcgtgcgcgaggcg
ctgctgcgcgaacgctaccgtggcggccagagtttctatgtcgtgccgcgcatcgaggac
cttgccgaggtgaaggacttcctcgacaagaacgtgtccgaggtgcgggtcgcagtggcg
catggccagatggcggcgacgcagctcgaagacatcatgtccgccttctatgacggacag
ttcgacgtgctgctgtcgaccaccatcgtcgaatccggcctcgatatcccgaccgccaac
acgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctaccagcttcgcggc
cgcgtcggacgttcgaagacccgcgcctatgccatcttcaccctgccggcgcagaagaca
atcaccgcgcaggccgaccgccgcctcaaggtgttgcagtcgctggatacgctgggggcg
ggcttccagctcgccagccacgacctcgacattcgcggcgccggcaacctgctgggcgac
gagcagtccggccacatcaaggaagtcggctacgagctctaccaggagatgctggaggag
gcgatcgccaacctcaaggccggcatcaccgcgccggtcgccgacaaatggtcgccgacc
atctccatcggtacgccggtgctgattccggaggattacgtcgcggacctgcatgtccgc
ctcaccctctatcgccgtctcgccgatctggagaccgacgcggagatcgagtccatcggc
gccgagctggtcgaccgcttcggcccgctgccggaagaggtggagcagcttctcaagctg
gtgtcgatcaaggcgctgtgccggcgcgccaatgtggagaaggtcgacgccggcccgcgc
ggcatggtgctcaccttccgcgacgggcgcttccccaacccggccggcttcatcgcctat
gtcggcaagccgcacgtcgtggcgaagatgcgccccgacggcaaggtggtgttctcggag
gactggccggatgccacggcgcggctcaggggcagcgcgggcatcctgaaggagcttgcc
aagatcgccgagcagggagcccgggcggcctga
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