Actinomyces naeslundii: ATCC27039_26880
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Entry
ATCC27039_26880 CDS
T05566
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ane
Actinomyces naeslundii
Pathway
ane03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ane00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATCC27039_26880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ane03400
]
ATCC27039_26880 (mfd)
Enzymes [BR:
ane01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATCC27039_26880 (mfd)
DNA repair and recombination proteins [BR:
ane03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ATCC27039_26880 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BDH78562
LinkDB
All DBs
Position
3159262..3163101
Genome browser
AA seq
1279 aa
AA seq
DB search
MAPRRGVTRLAAVLLTALLPPLLADADIARTVRAASSRSRSDRSLVVAPGARPAVLAAMT
LGEEGVQRVAGDDAEAAGSAAVGRKDTDSSSEDTSGTPLLVVTATGREAEETALALRSYL
PADDVAVMPAWETLPHERLSPRADTVAQRLSVLRRLAHPEDGGPIRVLVVPVRALLAPVI
AGLGELEPVQLAPGLTVGLEETARRLEAAAYTRVDIVESRGEYAVRGGILDVFPPSEPRP
VRVDFFGDEIDEVSSFAVADQRTIEALGAVTATACRELVLTDTVRERAAALADAVPGAAD
MLEKISQGIAVEGMESLAPVLVDAMVPLLDLVGDRLTVLLEPERVRKRAEDLTATTTEFL
AAAWTSAASGGTVPVDLSAAAFAHLAEARALALSSNRGWWSFTALAAGPETTRLDLSDPR
TYRGELERAVADLGRLARQGWTVVVATDGPGPGRRMAQLLGDGDVPARIVDQLSEVTELG
RDGDWTPDPAAPADETDGSAGDTGPDGAPITGPGDGVVRVTQASAGHGFLAEGLRLALIA
ESDLTGRASAGPRERRSLPARRARRSVDPLSLHTGDLVVHAQHGVGRFIELSRRTVGGAR
SSATREYLVIEYAPSKRGQPGDRLLVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKA
RKAVREIAGELVRLYAARAATTGHAFSPDTPWQTELEEAFPYTETPDQLSTIDEVKADME
KAQPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVSQHAETFTERYAGFP
VTVGALSRFQDAAESAKILEGLEKGSVDVVVGTHRLITGQVRFKDLGLVIIDEEQRFGVE
HKETLKALRTNVDVLSMSATPIPRTLEMAVTGLREMSTLATPPEDRHPILTYVGAYETKQ
VSAAIRRELLREGQVFFVHNRVEDIDATAARLAELVPEARVATAHGQMNEHQLEAVIDSF
WRKETDVLVCTTIVETGLDVSNANTLIVDRADRMGLSQLHQLRGRVGRGRERAYAYFLYP
SDKPLTETALERLRTIATNTDLGAGMQVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVR
MVSEAVSAYKKALARSGKAGADAVGFEEGDDEDVELRIELPVDATVPEDYIPHERLRLEA
YTKFAAARSGEQVDDVLEELADRYGPVPEATARLAALARLRALAAQLGVREIVAQGKSVR
FAPVDLPESARMKVTRLYPGTVLKPATRTIVVPAPGTNRMGGAALSGEEVVRWAEVLLHA
VVQGDASYETEATTYRKRR
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggcggggagtcactagactcgcggccgtgctcctgaccgcgctcctgcct
ccgctgctcgccgacgccgacatcgcccgcaccgttcgcgccgcctcctcccgctcgcgc
tccgaccgcagtctcgtggtggcaccgggtgcccgccccgccgtcctggctgccatgacc
ctgggcgaggagggcgtccaacgggtcgccggcgacgacgccgaggcagccggctcggcc
gccgtcgggcgaaaggacactgacagcagctccgaagacacctccggcacgcccctgctg
gtcgtcaccgccaccggtcgcgaggccgaggagaccgccctggccctgcgcagctacctg
ccggcagacgacgtcgccgtcatgcccgcctgggagaccctgccccacgagcgcctctca
ccgcgcgccgacaccgtggcccagcgcctgtccgtcctgcgccgcctggcccaccccgag
gatggcgggccgatccgcgtcctcgtcgtccccgtgcgcgccctgctggcgcccgtcatc
gccgggctcggcgagctcgagcccgtccagctggcccccggtctgaccgtgggcctggag
gagaccgcccgccgtctggaggccgccgcctacacgcgcgtcgacatagtcgagtcccgc
ggcgagtacgccgtgcgcggcggcatcctcgacgtcttcccgccctccgagccgcggccg
gtgcgcgtggacttcttcggtgacgagatcgacgaggtctcctccttcgccgtcgccgac
cagcgcaccatcgaggcactgggcgccgtgaccgccaccgcctgccgtgagctggtcctc
accgacacggttcgcgagcgcgccgccgccctggccgacgccgtccccggcgccgccgac
atgctggagaagatcagtcagggcatcgccgttgagggcatggagtccctcgccccggtg
ctggtcgacgcgatggtcccgctgctcgacctcgtcggcgaccggctcacggtgctgctg
gagcccgagcgggtgcgcaagcgcgccgaggacctcacggccaccaccaccgagttcctc
gccgcggcctggacctcggcggcctccggcggcacggtccccgtcgacctgtccgccgcc
gccttcgcccacctggccgaggcccgggccctggccctgtcctccaaccgaggctggtgg
tccttcaccgccctggccgccggccccgagaccacccgcctggacctcagcgacccgcgc
acctaccgcggcgagctcgagcgggcggtggctgatctgggccggctggcccgccagggc
tggaccgtcgtcgtcgcgaccgacgggcccggacccggccggcgcatggcccagctcctg
ggcgacggcgacgtacccgcccgcatcgtcgaccagctctcggaggtcaccgagctcggc
cgcgacggcgactggacccccgacccggccgcccctgccgatgagacggacggttcggcc
ggcgacaccggacccgatggtgccccgatcacgggccccggcgacggcgtcgtacgcgtc
acccaggccagcgccggccacggcttcctcgccgagggactgcgcctggccctcatcgcc
gagtccgacctcaccgggcgagcctcggcaggcccccgcgagcgccgcagcctgcctgcc
cgccgcgcccgccgctccgtggaccccctgtccctgcacaccggggacctcgtggtccat
gcccagcatggggtggggcgtttcatcgagctgagccggcgcaccgtgggcggggcccgg
tcgtcggccacccgcgagtacctcgtcatcgagtacgccccctccaagcgcggccagccc
ggcgaccgcctcctggtgcccaccgacgccctggaccaggtcaccaagtacgttggtggc
gacagccccgccctgagcaagatgggcggcgccgactgggccaagaccaagtccaaggcc
cgcaaggccgtgcgcgagatcgccggagagctcgtgcgactctacgccgcccgcgccgcc
accaccggacatgccttcagccccgacaccccctggcagaccgagctggaggaggcgttc
ccctacaccgagacccccgaccagctctccaccatcgacgaggtcaaggccgacatggag
aaggcccagccgatggaccggctcgtgtgcggcgacgtcggctacggcaagaccgagatc
gccgtgcgcgccgccttcaaggccgtccaggacggcaagcaggtggcggtcctggtgccc
actacgctgctggtgagccagcacgccgagaccttcaccgagcgctacgccggcttcccg
gtgaccgtgggggccctgtcccgcttccaggacgccgccgagtccgccaagatccttgag
ggcctggagaaggggagcgtcgacgtcgtcgtcggcacccaccgcctcatcaccggccag
gtgaggttcaaggacctcggcctggtcatcatcgacgaggagcagcgcttcggggtggag
cacaaggagaccctcaaggcgctgcgcaccaacgtggacgtcctgtcgatgtccgccacc
ccgatcccgcggacactggagatggcggtcaccggcctgcgcgagatgtccaccctggcg
accccgcccgaggaccgccacccgatcctcacctacgtgggcgcctacgagaccaagcag
gtctccgccgcgatccgccgtgagctgctgcgcgaggggcaggtgttcttcgtccacaac
cgggtcgaggacatcgacgccaccgccgcgcgcctggccgagctggtccccgaggcgcgc
gtggccaccgcccacgggcagatgaacgagcaccagctggaggccgtcatcgactccttc
tggcgcaaggagaccgacgtcctcgtgtgcaccacgatcgtggagaccgggctggacgtg
tccaacgccaacaccctcattgtcgaccgcgccgatcgcatgggcctgtcccagctccac
cagctgcgcgggcgcgtggggcgcggccgggagcgggcctacgcctacttcctctacccc
tcggacaagccgctgaccgagacggccctggagcgcctgcgcaccatcgccaccaacacc
gatctgggggccgggatgcaggtggccatgaaggacctggagatccgcggctcgggcaac
ctgctcggcggcgagcagtccgggcacatcgccggggtcggcttcgatctgtacgtgcgc
atggtctccgaggccgtctccgcctacaagaaggccctggcccgctccgggaaggctggg
gccgacgccgtcggcttcgaggagggcgacgacgaggacgtcgagctgcgcatcgagctc
cccgtggacgccaccgtccccgaggactacatcccccacgagcgcctgcgcctggaggcg
tatacgaagttcgcggcggcgcgctcgggcgagcaggtcgacgacgtcctggaggagctg
gctgaccgctacgggccggtgcccgaggcgaccgcccgtctggcggcgctggcgcggctg
cgggccctggccgcccagctgggggtgcgcgagatcgtcgcccagggcaagtcggtgcgt
ttcgccccggtggacctgcccgagtcggcgcgcatgaaggtcacccgcctctacccgggc
acggtcctcaagccggccacgcgcaccatcgtggtgcccgcgccgggcaccaaccgcatg
ggcggggcggcgctgtccggcgaggaggtcgtgcggtgggccgaggtgcttctgcacgcc
gtcgtccagggcgacgcctcctacgagaccgaggccaccacctaccgcaaacgccgctga
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