Aminobacter niigataensis: AMD1_3407
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Entry
AMD1_3407 CDS
T09606
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
anj
Aminobacter niigataensis
Pathway
anj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
anj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AMD1_3407 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anj03400
]
AMD1_3407 (mfd)
Enzymes [BR:
anj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AMD1_3407 (mfd)
DNA repair and recombination proteins [BR:
anj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AMD1_3407 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
UB2H
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
CAI2934681
LinkDB
All DBs
Position
AMD1:3253910..3257410
Genome browser
AA seq
1166 aa
AA seq
DB search
MSLLKPIGLPKGRAGQFIVDGVADGYEAFAIAVAAAEMAPDRPMLFVARDGQRLPQIVEA
LAFVAPDMPVLELPAWDCLPYDRVSPGSDAAARRLDALAAMIALRKEPHRAIVLTTANAL
LQRVPPSAAIEAQEFRAKPGNQVEMNGLVARLERAGFERVPTVRGVGEFAVRGGILDLYA
PGATDALRLDFFGDTLETIRAFDVASQRTTGSRNSVTLQAMSEVALTPETISKFRRSYIE
AFGAPSRDDALYAAVSEGRRFAGMEHWLPFFYSHLETMFDYLPDAPVVFDHLAREALGER
HALILDHYDSRRKQGEGKGLKDAVPYKPVAPEQMYLSPDEVASALADQANAELTPFDTPF
SSGRKVLHAGSHAGRSFAEERADPNANVFDVVARHIADQRAAKRRVVVAGWTEGSLDRLT
QILDEHDLGNLKRVANLAEIEALKAGEAGLAVLPIEAGFEAGDLVFVAEQDILGDRLIRR
SKKRKRAADFIAEASALSSGDIVVHADHGIGRFVGLKTIEALGAPHDCLEIHYASDGRLF
LPVENIELLSRYGSDSAEAQLDKLGGGAWQSRKAKLKRRLLEMAGQLIKLAAERHMREAP
AMNPPDGIYGEFAARFPYEETDDQQSAIDAVMEDLGAGKPMDRLICGDVGFGKTEVALRA
AFIAAMEGFQVAVVVPTTLLSRQHFKTFSQRFAGLPVKVRQASRLVGTKELAETKQGITE
GTVDIVVGTHALLGSSISFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPR
TLQLALTGVRELSLIATPPVDRMAVRSFISPYDPLVIRETLLRERYRGGHSFYVVPRIAD
LAEVHQFLQESVPELKVAVAHGQMAAGQLDDIMNAFYDGQYDVLLSTTIVESGLDIPTAN
TLIVHRADMFGLAQLYQLRGRVGRSKVRAYALFTLPANRTLTTTADRRLKVLQSLDTLGA
GFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELRGSGEAIDTGWSPLI
AVGTAVMIPEAYVPDLQLRLALYRRLGDLENTEEIDGFGAELIDRFGPLPEEVKHLLKIV
FIKALCRKANVEKLDAGPKGVVVQFRKREFANPAGLVRYIAEQGSLAKIRPDHSVVFARD
WPNPEKRLAGSAVIMTQLAKLAEQAA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgctgaaaccaatcggcctgcccaagggccgcgccggacagttcatcgtcgat
ggcgtggccgacggctacgaggctttcgcgattgcggtggcggctgccgagatggcgccc
gaccggccgatgctgtttgtcgcgcgcgacggccagcggctgccacagatcgtcgaggca
ctggcattcgtggcgcccgatatgccggtgctcgagctgccggcctgggactgcctgcca
tacgaccgcgtatcgcccggctcggatgcggcggcgcgacggctcgatgcgctggcggcg
atgatcgcgcttcggaaggagccgcatcgcgccatagtgctgaccacggccaacgcgctg
ttgcaacgggtgccgccttcggctgccatcgaagcgcaagaattccgcgccaagccgggc
aaccaggtcgagatgaacgggctggtggcgcggctggagcgcgccggcttcgagcgcgtg
ccgacggtgcgcggcgtcggcgaattcgccgtgcgcggcggcatcctcgacctttatgcc
ccaggtgcgacagacgcgctgcggctcgacttctttggcgacacgctggaaacgatccgc
gccttcgacgtggcgagccagcgcacgacaggcagccgcaactcggtgacgcttcaggcg
atgagcgaggtggcgctgacgccggagacgatcagcaagttccgccgcagctatatcgag
gcgttcggtgcgccgtcgcgcgacgatgcgctctacgcagcggtcagcgagggccggcga
tttgccggcatggagcactggctgccgttcttctattcgcatctcgaaacgatgttcgac
tatctgcccgatgcgcccgtggtgttcgaccatctggcacgcgaggcgctgggcgagcgc
cacgccctgatcctcgaccactacgattcccgccgcaagcaaggcgagggtaaaggcctg
aaggacgcggtgccctacaaaccggtggcgccggagcagatgtacctgtcgccggatgag
gtggcttcggcgctcgccgaccaggccaatgccgaactgacccccttcgacacgcccttt
tcgagcggacgcaaggtgctgcatgccggctcgcatgcggggcgcagctttgccgaggaa
cgcgccgacccgaacgccaatgtcttcgacgtggtggccaggcacatcgccgaccagcgg
gcggcaaagcggcgcgtcgtcgttgccggctggaccgaaggctcgctcgaccggctgaca
cagatactcgacgagcacgatctcggcaacctcaagcgcgtggcaaaccttgccgagatc
gaggcgctgaaggccggcgaagcgggccttgccgtgcttccgatcgaagcgggcttcgag
gcgggcgacctggtgttcgtcgccgagcaggacatcctgggcgaccggctgatccggcgc
tcgaagaaacgcaagcgcgccgccgatttcatcgccgaagcctcggcgctgtcgtccggt
gacatcgtcgtacacgccgaccacggcatcggccgcttcgtcgggctgaagaccatcgag
gcattgggcgcgccgcacgactgcctggaaatccactatgcctcggacggccggctgttc
ctgccggtcgaaaacatcgagcttctgtcgcgctacggatcggattcggccgaagcccag
ctcgacaagctcggtggcggtgcctggcagtcgcggaaggccaagctcaagcggcgcctg
ctcgaaatggccgggcagctgatcaagctcgccgccgaacggcacatgcgcgaagcgccg
gcgatgaacccgcccgacggtatctatggcgagttcgcggcgcggttcccctacgaggag
accgacgaccagcagagcgccatcgacgcggtgatggaagaccttggcgccggcaagccg
atggaccgcctgatctgcggcgacgtcggcttcggcaagacggaagtggcgctgcgcgcg
gccttcatcgctgccatggaaggtttccaggtggcggtggtggtgccgacgacgcttctg
tcgcgccagcacttcaagacgttttcgcagcgcttcgccggcctgccggtgaaggtgcgc
caggcgtcccggctggtcggtaccaaggaactggccgagaccaagcaaggcatcaccgaa
ggcacggtggatatcgtcgtcggcacgcacgcgctgctcggctcgtcgatctcgttcaag
aatctcggccttctgatcatcgacgaagagcagcatttcggcgtcaagcacaaggagcgg
ctgaaggaactgaagagcgacgtgcacgtgctgacgctttcggcgacgccgatcccgcgc
acgctgcagctggcgctgaccggcgtgcgcgagctgtcgctgatcgccacgccgccagtc
gaccgcatggcggtgcgcagcttcatctcgccctatgatccgcttgtgatccgcgaaacg
ctgctgcgcgagcgctatcgcggcggccacagcttctatgtcgtgccgcgcattgcagac
ctcgcggaagtgcatcaattccttcaggaatcggtgccggagctgaaggtcgcagtggcg
cacggccagatggcggcaggtcagctcgacgatatcatgaacgccttctacgacggccag
tacgacgtcttgctgtcgacgacgatcgtcgaatccggcctcgacatcccgacggccaac
acgctgatcgtgcaccgcgccgacatgttcggcctggcacagctctatcagctgcgcggt
cgtgtcggccgctcgaaggtgcgcgcctatgcgctgttcacgctgccggccaaccggacg
ctgaccaccactgccgaccgacggctcaaggtgctgcagtcgctcgacacgctgggggcg
ggcttccagctggccagccacgatctcgacatccgcggcgccggcaatctgctgggcgag
gaacagtcgggccacatcaaggaagtcggcttcgagctctaccagcagatgctcgaggag
gcggtggccgagctgcgcggcagcggcgaagcgatcgataccggctggtcgccgctgatc
gcggtcggcacggcggtgatgatcccggaagcctatgtgcccgacctgcaactgaggctt
gcgctctaccgccgtcttggcgacctggagaacaccgaggagatcgacggcttcggcgcc
gaactcatcgaccgcttcgggccgttgccggaagaggtcaagcacctgctcaagatcgtc
ttcatcaaggcgctgtgccgcaaggccaatgtcgagaagctggatgccgggccgaagggc
gtggtggtgcagttccgcaagcgcgaattcgccaacccggccgggctggtgcgctacatc
gccgagcagggttcgctggccaagatcaggcccgaccacagcgtggtgtttgcacgcgac
tggccaaacccggagaagcgactggccggttcggcggtgatcatgacgcagctggcaaaa
ctcgccgaacaggcggcctga
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