Acinetobacter nosocomialis: RR32_09870
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Entry
RR32_09870 CDS
T04196
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ano
Acinetobacter nosocomialis
Pathway
ano03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ano00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RR32_09870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ano03400
]
RR32_09870
Enzymes [BR:
ano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RR32_09870
DNA repair and recombination proteins [BR:
ano03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RR32_09870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJB48405
LinkDB
All DBs
Position
complement(2081480..2084941)
Genome browser
AA seq
1153 aa
AA seq
DB search
MFQQEISQLNLQQLKAGEKRWVGSLLGSSAALLLKEIANQHSSLLVLVARNNQHVAQLES
ELEFYGVKPTIFPDWEILPYDRLSPHQDIVSERLAILSNMPQQGVLLISASTLAQRVAPY
SWVLGKHFDIRVGQKFDLEQQKLRLVQAGYHLVDTVYDHGEFAVRGSIMDIFGSGQEAPI
RIDLFDDEIDSLKFFDPETQRTTTTLKSFTVLPAKEFPLKEGRSVFRDRYSEFFPTANPK
KNPIYQDVLDGIASPGIEFYLPLFFNKEQMQSQSMFTTYLPKNCIVITTNDVDTDLTSFW
KEVMRRYEDRRHNIDQPILAPEELFISPNNLLSALNQFPRMLVSAETIEEKAGALNLKTE
QPPKLPVDPKKEKPFAAVKKYIDEANHPVLLVAESAGRRESLKDALRSSLGEIPNVENFE
QFKTSQFAIAITNAPLDRGLLITDQLTVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLAIEGQDYEFLQLDYAEDAKVYVPVTNLHLISRYSGG
DPDLAPLHKIGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSLYMQFAS
GFAYEETLDQANAIEATLYDMQQAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNDKQVAVL
VPTTLLAQQHYESFKDRFADWPVRIEVLSRFGSNKTHLKNIEDLADGKVDIVVGTHKLLQ
ENVQFKDLGLMVVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDASIKEAILRELLRGGQVYFLHNEVDTIERAAENIRMLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTILIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASILGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQQGKTPNFDAPLSLTAEINLHIPALIPDD
YLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGVPPQSVKHLFSVHQIRLKAEHLGI
TKIDINTQGGNIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVMVQLEDYEKRIQFI
NDLLQKLMSELHA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattgaatttgcaacaactcaaggccggtgaaaagcgt
tgggtggggtcattattaggttcatcagcagctttattgcttaaagaaattgcgaatcag
cattcttctttattggtattagttgctagaaacaaccaacatgttgctcaattagaaagt
gaacttgaattttatggagtaaagccgacaatttttcccgattgggaaattttgccttat
gatcggttatctccgcatcaggatattgtctcggaacgtcttgcgattttatcgaatatg
ccgcagcaaggcgtattactcatttcagcaagtactttggctcaacgggttgcgccttac
tcatgggttttgggtaagcactttgatataagagtggggcaaaaatttgatttagaacag
caaaaactaagattggttcaggctggctaccatttagtagatacagtttatgatcatgga
gaatttgctgtacgcggcagtattatggatatttttggatctgggcaagaagctcctatc
cgcatagacctatttgatgacgaaattgattcgttaaaattctttgaccctgaaacccag
agaacaaccacaacgttaaaaagttttactgttctacccgctaaagagtttccattaaaa
gaaggacggtcagtttttagagatcgttattctgagtttttcccgacagcaaatcctaag
aaaaatccaatttatcaagatgttttagatggcatagcatctcctggaattgaattttat
ttaccgttattttttaataaagaacagatgcaatcgcaaagtatgtttacaacgtacttg
ccaaagaattgcattgtaattacaactaatgatgttgataccgatttaactagcttctgg
aaagaagttatgcgtcgttatgaagatcgacgtcataatattgatcaacctattcttgct
cctgaagagttatttatttctccaaataatttgctgagtgctttaaatcagtttccgcgt
atgcttgtaagtgcagaaactattgaagaaaaagctggtgcacttaaccttaaaactgag
caaccccctaaattaccggtcgatccaaaaaaagagaaaccatttgcagctgtaaaaaaa
tatattgatgaagcaaaccatcctgttctattggttgcagaaagtgcagggcgccgagaa
agtttaaaagatgcattgcgttcaagtttgggtgaaattccgaatgtagagaattttgag
caattcaaaaccagtcaatttgcaattgcgattaccaatgcacctttagaccgtggctta
cttataactgatcaattaacagttatttcagaaaatcagctttatgaacaccgagttgta
cagcgtcgtcgtaagcgtcaacaagaagtttctgaagagtttctaattcgaagcttaact
gagctaagtattggtgctcctgtcgtacatattgatcatggtgtgggacgttatgctggc
ttaattacacttgctatcgaaggtcaagactatgagttcttgcaactagattatgctgaa
gatgccaaagtttatgtcccagtaacgaacttacatctgattagccgttatagtggcggc
gacccagatttagcaccgttacataaaattggtactgatgcttggagtaaagcaaaacgt
aaagcattagagcaaattcatgatgttgcagccgagcttttgcatattcaggcacgtcgt
cagtcaaaacctggttttgcttttgaattggatcagtcgctttatatgcaatttgcaagt
ggctttgcgtatgaagaaacacttgatcaggccaatgcaattgaagctacgttgtatgat
atgcagcaagcaaaaccaatggatagattggtatgtggtgatgtaggttttggtaaaacc
gaagtggccatgcgagcagcatttgttgcagtacaaaatgataaacaagttgcagtttta
gttcctaccacgttacttgcccaacagcattatgagtcttttaaagatcgttttgctgat
tggcctgttcgtattgaagtgttatcacgatttggttcgaacaaaactcatttaaaaaat
attgaagacttggcggatggtaaagtcgatattgtggtaggcacacacaagttattacaa
gagaatgttcagtttaaagatctaggcttaatggtcgtggatgaggaacatcgctttggc
gtacgtgacaaagagcgaattaaggctttgcgtgctgatgttgatatgttgacccttacg
gcaactccaattcctcgtacgcttaatatggctttttcgggaatgcgtgatttatcgatc
attgccactccaccagcacgtcgtttagcagtaaaaacgtttgttcaagaacatacagat
gcttcaatcaaagaggcgattttgcgtgagttattacgtggtggacaagtttacttctta
cataatgaagtagataccattgagcgagcggctgaaaatattcgtatgcttgtgccagaa
gcacgcgtggcggtagcacatggacaaatgcgcgaacgtgaacttgagcaagttatgcag
cagttctaccacaaagaatataatgtgctggtgtgttcaaccattattgaaacgggtatt
gatgttccaaatgccaatacaattttaattgaacgtgcagataagcttggtttagcacaa
ttgcaccagttgcgtggacgtgtaggtcgttcacatcaccaagcttatgcttacttattg
gtgccttcaatcaagcacttgaaaggtgatgctgaaaaacgtcttgatgcaattcaacga
gcttctatattaggcgcaggctttatgctcgctacggaagatttagaaattcgtggtgct
ggtgaattgttgggtgagcaacaaagcggttcaatgcaggcgatcggatatagcttgtat
atggaaatgcttgagaaagcgactaaagcaattcaacagggtaaaacaccgaatttcgat
gcaccattgtcgttaactgcagaaattaacttacatattccagcacttattccggatgat
tacttaggtgatgttcatcaacgtttattattctataaacgtattagtaatacagatact
caagaaaaactggataatattcgcatggagcttattgaccgttttggtgttccaccgcaa
tcagttaaacacttgtttagcgtgcatcagatccgcttaaaagcggagcatttgggtatt
acaaaaattgatattaatactcaaggcggcaacattgaattttcaccagatactccagtt
caggcgattagtattattcaactcatgcaaaagaacccgacctattatcgtatggaaggt
ggacagcgcttgaaagtgatggtgcagcttgaagactatgaaaaacgaattcaatttatc
aatgatttactacaaaaattgatgagtgaattacatgcctga
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