KEGG   Antarcticibacterium arcticum: FK178_09475
Entry
FK178_09475       CDS       T06142                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
anp  Antarcticibacterium arcticum
Pathway
anp03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:anp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FK178_09475 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:anp03400]
    FK178_09475 (ligD)
Enzymes [BR:anp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FK178_09475 (ligD)
DNA repair and recombination proteins [BR:anp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FK178_09475 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme GH3 Cas_csx3
Other DBs
NCBI-ProteinID: QED37942
UniProt: A0A5B8YJ22
LinkDB
Position
complement(2095581..2098037)
AA seq 818 aa
MSLEEYFKKRDFDTTPEPKGSIPKSEGDLRFVIQRHQATRLHYDLRLEMQGTLKSWAVPK
GPSLNPGDKRLAIQTEDHPIQYLTFQGTIPKGNYGAGIMEIWDEGIYQGTGGISKKELLQ
QFEKGDLKLEFFGKKIKGTFALVRTSRGEKGNQWLLIKKTDDFSTDLAYDAEDFSPFTAA
KPKPAPKVKSLQPTETIKPMLATATKKIFNDPQWIYELKWDGYRMIANIKDGEADLSSRN
GVSFNSKFSRLKRDLEQIPHNVILDGEVVIVDKKGVPDFQKLQNYDDQTLGELRFYVFDM
LYLNGMSMLDLPLLERKSLIEEVIEGTYHTFYCDHMEGMGSTFYKRAIDAGMEGVIAKKA
NSRYSPGYRSENWLKIKAVQSTEAIICGYTDSESGGAVFGSLILGMYRDEKLTYIGNCGT
GFSAAEQKKLLTKFKKLETAESPFKKKINLKGRTPHWLKPQLICEVHFTEWTKTGSLRHP
VYKGLRDDKSLTEITGEKVIENPDGVEESSNAGKSAKAGHLEIGGIEVPFTNLEKIYWPE
SGYRKYDLIDYYIKVSDVMLPYLIDRPENMHRHPNGIDKPGFYQKDNEGILPEWIETFRV
HSKSSNKDIEYLLCQNEATLLYMANLGCIEINPWSSRIQQLDNPDFTVIDIDPSEKNTFE
EVIEVAQAAKEVMDKARIHGFCKTSGSSGLHIYIPLQAKYTYDEGRDFTKLLCYFIHEML
PGTTSMERNIKKRGKKIYLDFLQNRKGQTLAAPYCVRPKPGATVSAPITWDEVKPGLKMQ
DFTIKTMPGRIAELGDIFQKVLGKGIDMETALHHLNED
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgagcttagaagaatatttcaaaaagcgtgattttgatactacccccgagcctaaaggt
tctattcccaaaagtgaaggggacctgcgctttgttatccagcggcatcaggccacccgc
ctgcattatgacctgcggctggagatgcaggggaccttaaaaagctgggcagtgccaaaa
gggccatccctgaatcccggtgataagcggcttgccatacaaacggaggaccatcctatt
caataccttactttccagggaaccatcccaaaaggcaattacggcgcagggataatggag
atttgggatgaaggtatttaccagggcaccggcgggataagcaaaaaggaactgctgcag
caatttgaaaaaggagatttgaagctggaattcttcggaaaaaagatcaaaggcactttt
gcgcttgtaaggaccagcagaggtgagaaagggaaccaatggctgctcataaaaaagacc
gatgatttttctacagatcttgcttatgatgccgaagatttttcaccctttacggcggcg
aaacctaaaccggcacccaaagttaaaagcctccagcctaccgaaaccatcaaaccaatg
cttgctaccgccaccaaaaagatctttaatgatccccaatggatctacgaactcaagtgg
gacggctacaggatgatcgccaatataaaagacggcgaggcagatctttcctctcgcaac
ggggtctcctttaattctaaattttcacggcttaaaagggatcttgaacaaattccgcat
aatgtaatcctggatggggaggttgttatagtggataaaaaaggggtgccagattttcag
aaactgcagaattatgacgaccaaaccctgggagaactgcgcttctatgtatttgatatg
ttgtatttaaatgggatgagcatgcttgacctccctttgctggagcgaaaatccttgatc
gaagaagttattgaaggcacctatcacactttttattgtgaccatatggaagggatgggc
agtactttttataaacgcgccatagatgccgggatggagggggtgatagccaaaaaagcc
aattccagatacagcccggggtaccgcagtgaaaattggctgaaaattaaagctgttcaa
agcaccgaggccattatttgcgggtacacagattctgaaagcgggggtgcggttttcggt
tcacttattcttggaatgtaccgggatgaaaaacttacctatattgggaactgtggcacc
ggattttcagccgcagaacaaaaaaagctgttgaccaaatttaaaaaactggagactgcg
gaaagtccgttcaaaaagaagataaatctaaaaggtcgcactccacactggttaaaaccc
cagcttatttgcgaggtgcattttactgaatggaccaaaacggggagtttacgccacccc
gtctataaaggtcttcgggatgataagagccttaccgagatcacaggggaaaaagtaatt
gaaaatcctgatggcgtagaggaaagctccaatgcggggaagtctgcaaaagcaggtcac
ctggagattggcggcatagaggtgcccttcaccaacctcgaaaagatctactggcctgaa
tctggttatagaaaatatgaccttatagattattatattaaagtgagtgatgttatgttg
ccatatttaatagacaggccggaaaatatgcaccggcatcccaacgggattgataagccc
ggattttatcaaaaggataatgaaggcattcttccggaatggatagagaccttcagggtg
cactcaaaatcatccaacaaggatatagaataccttctgtgccagaatgaagccaccttg
ctgtatatggcaaatttggggtgtatagagatcaatccgtggagctcccgcattcagcag
cttgataatcccgattttacggtaatagatatagacccttcagaaaagaacacttttgaa
gaagtcatagaagtagcccaggcggcaaaagaggtaatggataaggccaggatccatgga
ttttgtaaaacctcaggttccagcggactccatatctatattcctctgcaggcaaaatac
acttatgatgagggccgggatttcaccaaactgctttgttatttcattcacgaaatgttg
cccggcacaacaagcatggagcggaatatcaaaaagaggggaaagaagatctacctggac
tttttgcagaaccggaaagggcaaacccttgctgcaccttattgtgttaggccaaaaccc
ggagctacggtatccgcccctattacctgggatgaggtgaaacccggcttgaaaatgcag
gattttaccataaagaccatgccgggccgcatcgctgagttaggagatatttttcaaaag
gtgctgggaaaaggaatcgatatggaaacggcccttcatcacctaaacgaggattaa

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