Antarcticibacterium arcticum: FK178_09475
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Entry
FK178_09475 CDS
T06142
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
anp
Antarcticibacterium arcticum
Pathway
anp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
anp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FK178_09475 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anp03400
]
FK178_09475 (ligD)
Enzymes [BR:
anp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FK178_09475 (ligD)
DNA repair and recombination proteins [BR:
anp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FK178_09475 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
GH3
Cas_csx3
Motif
Other DBs
NCBI-ProteinID:
QED37942
UniProt:
A0A5B8YJ22
LinkDB
All DBs
Position
complement(2095581..2098037)
Genome browser
AA seq
818 aa
AA seq
DB search
MSLEEYFKKRDFDTTPEPKGSIPKSEGDLRFVIQRHQATRLHYDLRLEMQGTLKSWAVPK
GPSLNPGDKRLAIQTEDHPIQYLTFQGTIPKGNYGAGIMEIWDEGIYQGTGGISKKELLQ
QFEKGDLKLEFFGKKIKGTFALVRTSRGEKGNQWLLIKKTDDFSTDLAYDAEDFSPFTAA
KPKPAPKVKSLQPTETIKPMLATATKKIFNDPQWIYELKWDGYRMIANIKDGEADLSSRN
GVSFNSKFSRLKRDLEQIPHNVILDGEVVIVDKKGVPDFQKLQNYDDQTLGELRFYVFDM
LYLNGMSMLDLPLLERKSLIEEVIEGTYHTFYCDHMEGMGSTFYKRAIDAGMEGVIAKKA
NSRYSPGYRSENWLKIKAVQSTEAIICGYTDSESGGAVFGSLILGMYRDEKLTYIGNCGT
GFSAAEQKKLLTKFKKLETAESPFKKKINLKGRTPHWLKPQLICEVHFTEWTKTGSLRHP
VYKGLRDDKSLTEITGEKVIENPDGVEESSNAGKSAKAGHLEIGGIEVPFTNLEKIYWPE
SGYRKYDLIDYYIKVSDVMLPYLIDRPENMHRHPNGIDKPGFYQKDNEGILPEWIETFRV
HSKSSNKDIEYLLCQNEATLLYMANLGCIEINPWSSRIQQLDNPDFTVIDIDPSEKNTFE
EVIEVAQAAKEVMDKARIHGFCKTSGSSGLHIYIPLQAKYTYDEGRDFTKLLCYFIHEML
PGTTSMERNIKKRGKKIYLDFLQNRKGQTLAAPYCVRPKPGATVSAPITWDEVKPGLKMQ
DFTIKTMPGRIAELGDIFQKVLGKGIDMETALHHLNED
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgagcttagaagaatatttcaaaaagcgtgattttgatactacccccgagcctaaaggt
tctattcccaaaagtgaaggggacctgcgctttgttatccagcggcatcaggccacccgc
ctgcattatgacctgcggctggagatgcaggggaccttaaaaagctgggcagtgccaaaa
gggccatccctgaatcccggtgataagcggcttgccatacaaacggaggaccatcctatt
caataccttactttccagggaaccatcccaaaaggcaattacggcgcagggataatggag
atttgggatgaaggtatttaccagggcaccggcgggataagcaaaaaggaactgctgcag
caatttgaaaaaggagatttgaagctggaattcttcggaaaaaagatcaaaggcactttt
gcgcttgtaaggaccagcagaggtgagaaagggaaccaatggctgctcataaaaaagacc
gatgatttttctacagatcttgcttatgatgccgaagatttttcaccctttacggcggcg
aaacctaaaccggcacccaaagttaaaagcctccagcctaccgaaaccatcaaaccaatg
cttgctaccgccaccaaaaagatctttaatgatccccaatggatctacgaactcaagtgg
gacggctacaggatgatcgccaatataaaagacggcgaggcagatctttcctctcgcaac
ggggtctcctttaattctaaattttcacggcttaaaagggatcttgaacaaattccgcat
aatgtaatcctggatggggaggttgttatagtggataaaaaaggggtgccagattttcag
aaactgcagaattatgacgaccaaaccctgggagaactgcgcttctatgtatttgatatg
ttgtatttaaatgggatgagcatgcttgacctccctttgctggagcgaaaatccttgatc
gaagaagttattgaaggcacctatcacactttttattgtgaccatatggaagggatgggc
agtactttttataaacgcgccatagatgccgggatggagggggtgatagccaaaaaagcc
aattccagatacagcccggggtaccgcagtgaaaattggctgaaaattaaagctgttcaa
agcaccgaggccattatttgcgggtacacagattctgaaagcgggggtgcggttttcggt
tcacttattcttggaatgtaccgggatgaaaaacttacctatattgggaactgtggcacc
ggattttcagccgcagaacaaaaaaagctgttgaccaaatttaaaaaactggagactgcg
gaaagtccgttcaaaaagaagataaatctaaaaggtcgcactccacactggttaaaaccc
cagcttatttgcgaggtgcattttactgaatggaccaaaacggggagtttacgccacccc
gtctataaaggtcttcgggatgataagagccttaccgagatcacaggggaaaaagtaatt
gaaaatcctgatggcgtagaggaaagctccaatgcggggaagtctgcaaaagcaggtcac
ctggagattggcggcatagaggtgcccttcaccaacctcgaaaagatctactggcctgaa
tctggttatagaaaatatgaccttatagattattatattaaagtgagtgatgttatgttg
ccatatttaatagacaggccggaaaatatgcaccggcatcccaacgggattgataagccc
ggattttatcaaaaggataatgaaggcattcttccggaatggatagagaccttcagggtg
cactcaaaatcatccaacaaggatatagaataccttctgtgccagaatgaagccaccttg
ctgtatatggcaaatttggggtgtatagagatcaatccgtggagctcccgcattcagcag
cttgataatcccgattttacggtaatagatatagacccttcagaaaagaacacttttgaa
gaagtcatagaagtagcccaggcggcaaaagaggtaatggataaggccaggatccatgga
ttttgtaaaacctcaggttccagcggactccatatctatattcctctgcaggcaaaatac
acttatgatgagggccgggatttcaccaaactgctttgttatttcattcacgaaatgttg
cccggcacaacaagcatggagcggaatatcaaaaagaggggaaagaagatctacctggac
tttttgcagaaccggaaagggcaaacccttgctgcaccttattgtgttaggccaaaaccc
ggagctacggtatccgcccctattacctgggatgaggtgaaacccggcttgaaaatgcag
gattttaccataaagaccatgccgggccgcatcgctgagttaggagatatttttcaaaag
gtgctgggaaaaggaatcgatatggaaacggcccttcatcacctaaacgaggattaa
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