Anaerocolumna sedimenticola: Ana3638_23280
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Entry
Ana3638_23280 CDS
T06399
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
anr
Anaerocolumna sedimenticola
Pathway
anr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
anr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ana3638_23280 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anr03400
]
Ana3638_23280 (ligD)
Enzymes [BR:
anr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ana3638_23280 (ligD)
DNA repair and recombination proteins [BR:
anr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ana3638_23280 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
mRNA_cap_enzyme
RNA_ligase
Lipase
Motif
Other DBs
NCBI-ProteinID:
QHQ63336
UniProt:
A0A6P1TUH5
LinkDB
All DBs
Position
complement(5226551..5228989)
Genome browser
AA seq
812 aa
AA seq
DB search
MTSKLNKYNEKRNFDRTLEPEGITEIAEEGLRFVVQHHMARKEHYDLRLEWDGVLLSWAV
PKGPSYDTRDKRLAVHVEEHPLEYRNFEGTIPKGEYGGGIIMIWDEGDWEPYGNVEEGLR
EGVLKFILKGTRLKGKWALVQLKAKEGENKDNWLLLKEKDEYVKTDNGISEFTTSIRTGR
TMKEIEEGEDEKFTKNPFEVTDVQLAKLVKAVPKGDEWLYEMKYDGYRILSFIEGNRVRL
ITRNGNDYTKRFKDVAYSLVNFAGGRAMILDGEMTITDVSGKTDFQALQSYMKNPKGKNL
TYIIFDLLALDGADLRGKRLIDRKETLEALMINAPKNLYYSRHVRGFGKESFTAACEAGM
EGIVGKRDDSTYSGTRNGDWIKLKCDKRQEFVIGGYTLTDKKTRGVSSILLGVYQSGDLV
YTGRAGTGLSERDMKELEKKFESIKRMEPPFKLAPKPKSNEEITWLEPTLVAEIKFAEWT
GENLLRQASFKGLRTDKDPKEIKMEKADEEIQLPLSKETERPMETGGNSIIIKGIKITNP
DKVIFEDPEITKADVIRYYEEVSERMLPYVSHRVLSIVRCPKGISQTCFFKKHPGPGSKG
IVIIPVSGSDRETEDYFYIENTSGLISETQMGTLEFHTWGSRVDDLEKPDMMVFDLDPDE
GMDPSTVRQGVRDMKNILTELSLNSYLKTSGGKGYHVVVPLKPAVTWEVVHDFTRSVAEV
MEKKWPDRYTSNVRKAKRTNKIFIDWIRNGRGATSIAPYSIRARKGARISMPIDWEELDT
VAPDGVNMEDALRRIRGNDPWKDFFQNNQQLK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaaagcttaataaatataacgagaaaaggaattttgacaggaccttggaaccg
gagggtataacagaaattgccgaggagggtcttaggtttgttgtccagcaccatatggcc
cgcaaagaacactatgatttacgtttagaatgggacggagttttactcagctgggcggta
cccaagggtccttcctatgatacccgtgacaagaggcttgccgtacatgtggaggagcat
cccttggaatacaggaactttgaagggacaattcccaaaggggaatatggcggtggcatc
atcatgatttgggatgaaggcgattgggaaccctatgggaatgtggaggaaggactccgt
gaaggagtgcttaagtttatcttaaaaggaacaagacttaagggaaagtgggctctggtg
caattgaaagcaaaagagggcgagaacaaggacaactggcttttgttaaaagaaaaagat
gagtatgtcaaaactgataatgggatttcggagtttacaaccagcataagaacagggcga
accatgaaggaaattgaagaaggagaagacgaaaagtttacgaagaacccttttgaagta
actgacgtacagcttgccaaattagtaaaagcggttcctaaaggtgatgagtggctttat
gagatgaaatatgacggctacaggatacttagttttatagaaggcaatagggtacggctg
attaccagaaacggcaatgactatacaaagcggtttaaagatgtcgcctattctcttgtc
aattttgccggcggaagagcgatgattctggatggtgaaatgactatcaccgatgtttcg
ggcaagacagattttcaggcgctgcaaagctatatgaaaaatcccaagggtaaaaacctg
acatatatcatttttgacctcctggcactggatggagcggaccttagaggcaaacggctg
attgacagaaaagaaaccctggaagctttgatgataaatgctccaaaaaacctctactac
agccggcatgtcagaggattcggcaaggaaagtttcactgcagcctgtgaggcaggtatg
gaggggatcgttggtaaaagagatgattccacctacagcggaacaagaaacggagactgg
atcaaattaaaatgtgataaaaggcaggaatttgttattggaggatatacgctaactgat
aaaaaaacaagaggagtcagttcgattctgcttggtgtctatcaaagcggggatttggtt
tataccgggcgagccggaaccggtttaagcgaacgagacatgaaagaacttgagaaaaaa
tttgagagtataaagagaatggaacctccatttaaactagcaccgaaaccaaaatccaat
gaagagattacctggcttgaacccacactggtcgcagaaattaaatttgccgagtggacc
ggtgagaatctgttaaggcaggcaagttttaaaggcttgcggacagataaggaccctaag
gaaattaagatggaaaaagcggatgaggaaatacagcttccattatccaaagaaacggag
cggccgatggaaacaggtggaaacagtatcattattaaaggaataaagataaccaacccg
gataaggtgatatttgaagaccctgaaattacaaaagcggatgtgatccggtattacgag
gaagtatcggaacgtatgctgccatatgtgagtcacagggtcttaagtattgtacgctgc
cccaaaggtatttcacagacatgcttctttaagaaacatcctggcccgggcagcaaagga
attgtcataattcctgtttccggcagcgaccgggaaacagaagattatttctatattgag
aatacatccgggcttatatccgaaacacaaatgggcacactggaatttcatacctgggga
agccgtgtcgatgaccttgaaaaacctgatatgatggtatttgatcttgacccggatgag
ggaatggatcctagtacggtgcgccagggcgtacgggatatgaaaaatattcttacagaa
ctttcgctgaattcataccttaagaccagcggcggtaaaggataccatgttgtggtacct
ttaaaacctgccgttacatgggaggtggttcatgattttacaaggtcagttgccgaagtt
atggagaagaagtggcctgaccgctatacaagtaatgttagaaaagccaaacgtacaaat
aagatattcatagactggattcgtaacggcagaggtgctaccagtattgcaccttattcc
atcagggcaagaaaaggagcaagaatatccatgcccatcgactgggaagaacttgataca
gtggcacccgacggtgtcaatatggaagatgcacttcggagaatccgcggtaatgacccc
tggaaagatttttttcagaataatcagcagcttaaataa
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