Arvicanthis niloticus (African grass rat): 117693422
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Entry
117693422 CDS
T08817
Symbol
Scn10a
Name
(RefSeq) sodium channel protein type 10 subunit alpha isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
anu04040
]
117693422 (Scn10a)
Ion channels [BR:
anu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117693422 (Scn10a)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
Na_trans_cytopl
GPHH
CcmD_alt
IQ
Motif
Other DBs
NCBI-GeneID:
117693422
NCBI-ProteinID:
XP_034339963
EnsemblRapid:
ENSANLG00005024045
LinkDB
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Position
21:complement(39896654..40001773)
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AA seq
1942 aa
AA seq
DB search
MEFPFGSVGATNFRRFTPESLAEIEKQIAAHHAAKKARAKPRGQKDKGEKPRPQLDLKAC
NQLPRFYGELPAELVGEPLEDLDPFYSTHRTFMVLNKSRTISRFSATWALWLFSPFNLIR
RTAIKVSVHSWFSIFITVTILVNCVCMTQTDLSEKVEYAFTVIYTFEALIKILARGFCLN
EFTYLRDPWNWLDFSVIILAYVGAAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVGALI
HSVRKLADVTILTVFCLSVFALVGLQLFKGNLKNKCIKNGTDLHKADNFSSEMAGKIFTK
PGTSDPLLCGNGSDAGHCPSGYVCQKTSDNPDFNYTSFDSFAWAFLSLFRLMTQDSWERL
YQQTLRASGKMYMVFFVLVIFLGSFYLVNLILAVVTMAYVEQNQATIAEIEAKEKQFQEA
LEVLQKEQEVLAALGIDTTSLHSHNGSPLAPKNANERRPRVKSRVSEGSTDDNRSLQSDP
YNQRRMSFLGLSSGRRRASHGSVFHFRAPSQDVSFPDGITDDGVFHGDQESRRGSILLGR
GAGQAGPLPRSPLPQSPNPGPRHGEEGQLGVPTGEPTSGAPDGPALDTTGQKNFLSADYL
NEPFRAQRAMSVVSIMTSVIEELEEPKLKCPPCLISLAQKYLIWECCPKWKKFKMVLFEL
VTDPFAELTITLCIVVNTVFMAMEHYPMSDAFDAMLQAGNIVFTVFFTMEMAFKIIAFDP
YYYFQKKWNIFDCVIVTVSLLELSASKKGSLSVLRTFRLLRVFKLAKSWPTLNILIKIIG
NSVGALGNLTFILAIIVFIFALVGKQLLSESYGCQNDGTSLWNGERLRWHMCDFFHSFLV
VFRILCGEWIENMWVCMEVSQKYICLILFLTVMVLGNLVVLNLFIALLLNSFSADNLTAP
EDDGEVNNLQLALARIQVFGHQASRAIVSYVSSHCRLRWPKMEPQLGVKPPLTSSKAENH
VAADAVNATVGNPAKPALSGSKENHGDFITDPNVWVSVPIAEGESDLEEIEEDVEQASQS
SWQEESPKEQEQLPQVPKCEDHQATQSPASRMSSEDLAPYLGERWKREDNPQVPAEGVDD
TSSSEGSTVDCPDPEEILRKIPELADELDEPDDCFTEGCTRCCPCCKVNTSKSPWATGWQ
VRKTCYRIVEHSWFESFIIFMILLSSGALAFEDNYLEEKPRVKSMLEYTDRVFTFIFVFE
MLLKWVAYGFKKYFTNAWCWLDFLIVNISLTSLIAKILEYSDVASIKALRTLRALRPLRA
LSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFSRCVDTTNNPFSL
VNSTIVDNKLACHNQNTTGHLFWVNVKVNFDNVAMGYLALLQVATFKGWMDIMYAAVDSR
EVDSQPNWEESLYMYLYFVVFIIFGGFFTLNLFVGVIIDNFNQQKKKLGGQDIFMTEEQK
KYYNAMKKLGSKKPQKPIPRPLNKYQGFVFDIVTRQAFDITIMVLICLNMVTMMVETDDQ
SKEKTNVLGKINQFFVAVFTGECVMKMFALRQYYFTNGWNVFDFIVVILSIGSLVFSAIL
TSLENYFSPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVMFI
YSIFGMASFANVVDEAGIDDMFNFKTFGNSMLCLFQITTSAGWDGLLSPILNTGPPYCDP
NLPNSNGSVTRDNCGSPAVGIIFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPLSE
DDFDMFYETWEKFDPEATQFIAFSALSDFADTLSGPLRIPKPNRNILIQMDLPLVPGDKI
HCLDILFAFTKNVLGESGELDSLKINMEEKFMATNLSKASYEPIATTLRWKQEDISATVI
QKAYRSYMLQRSLTLSNPLNVPRAEEDGVSLPGEGYATFMANGSGGLPDKSESASAMSFP
PSYDSVTKGLSDRVDVSTSSSM
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atggagttcccctttgggtccgtgggagctaccaacttcagacggttcactccagagtca
ctggcagagatcgagaagcagatcgctgcccaccacgccgccaagaaggccagagccaag
cccagaggacagaaggacaagggtgagaagcccaggcctcagctggacttgaaagcctgt
aaccagctgcccaggttctatggtgagctcccagcagaactggtcggggagcctctggag
gacctggatcctttctacagcacacacaggacattcatggtgttgaataaaagcaggacc
atttccagattcagtgccacttgggccctgtggctcttcagtcccttcaacctgatcaga
agaacagccatcaaagtgtctgtccactcctggttctccatattcatcaccgtcactatt
ttggtgaactgtgtgtgcatgacccaaactgatctttcagagaaagtcgagtatgccttc
actgtcatttacaccttcgaggctctgataaagatactggcaagagggttttgtctaaat
gaattcacttatcttcgagatccctggaactggctggacttcagtgtcattattctggcg
tatgtgggtgcagcgatagacctccgtgggatttcaggcctgcggaccttccgagttctc
agagccctgaaaactgtttctgtgatcccaggacttaaggtcatcgtaggagccctgatc
cactcagtgaggaagctggccgacgtgaccatcctcacagtcttctgcctgagtgtcttt
gccttggtgggcctccagctcttcaaggggaaccttaagaataaatgcatcaagaatggc
acagatctccacaaggctgacaatttctcatctgaaatggcaggaaagatcttcaccaag
cctggtacttcggatcccttgttatgtggcaatgggtctgatgctggccactgccccagt
ggttatgtctgccagaaaacttctgacaacccggattttaattacaccagctttgattcc
ttcgcatgggcgttcctctcactgttccggctcatgacgcaggactcctgggagcgcctg
taccaacagacactccgggcttcagggaaaatgtacatggtcttttttgtgctggtcatc
ttccttggatcattctacctggtcaatttgatcttggctgtggttaccatggcatatgtg
gagcagaaccaggcaacaattgcagaaatcgaagccaaggaaaaacagttccaggaagcc
cttgaggtgctgcagaaggaacaggaggtactggcagccctggggattgacacaacctcg
ctccattcccacaatggatcacccttagcccccaaaaatgccaacgagagaagacccagg
gtgaaatcaagggtgtcagagggctcgacagatgacaacagatcactccagtccgaccct
tacaaccagcgcaggatgtctttcctaggcctttcttccggaagacgcagggctagccac
ggcagtgtgttccacttccgagcacccagccaagacgtctcttttcctgacgggatcacg
gatgatggggtctttcatggagaccaagaaagccgccgaggttccatattgctgggcagg
ggtgctggacaggcaggtcctctccccaggagcccactgcctcagtcccccaaccctggc
cctagacatggagaggagggacagctcggagtgcctactggtgaacctacctctggagct
ccggatggcccggcactcgatactacagggcagaagaacttcctgtctgcggactacctg
aatgaacctttccgagcacagagggcaatgagcgttgtcagtattatgacttctgtcatt
gaggaacttgaagagccgaagctgaagtgcccaccctgcttgatcagcttagctcagaag
tacttgatctgggagtgctgccccaagtggaagaagttcaagatggtgctcttcgagctg
gtgacggacccctttgcagagctcaccatcacactgtgcatcgtggtgaataccgtcttc
atggccatggaacactaccccatgtccgatgcctttgatgccatgctccaagccggcaac
attgtcttcaccgtgttttttacgatggagatggccttcaagatcattgccttcgacccc
tactactacttccagaagaagtggaacatcttcgactgtgtcatcgtcactgtgagcctg
ctagagctgagcgcatccaagaagggcagcctgtctgtgctccgcaccttccgcttgctt
cgggtcttcaagctagccaagtcctggcccaccctgaacatacttatcaagatcattggg
aattccgtgggggccctgggcaacctgaccttcatcctggccatcatcgtctttatcttc
gccctggttggaaagcagcttctctcggagagctatgggtgccaaaatgatggcacctcc
ttgtggaatggtgagagactccgctggcacatgtgtgacttcttccattccttcctcgtc
gtcttccggatcctctgtggagagtggatcgagaacatgtgggtctgcatggaggtcagc
cagaaatacatctgcctcatcctcttcttgactgtgatggtgctgggtaacctggtggtg
ctcaaccttttcatcgctttactgctgaactccttcagtgcggacaatctcacagcccca
gaggatgacggggaggtgaacaacttgcagttagcactggccaggattcaggtatttggc
catcaggccagtcgggccattgtcagttacgtcagcagccactgccggctccgttggccc
aagatggagccccagctgggggtgaaacccccactcacgagctccaaagccgagaaccat
gttgctgctgatgctgtcaacgctacagtggggaacccagcaaagccagctctcagtggc
tccaaggaaaaccacggggacttcatcactgatcctaacgtgtgggtctctgtgcccatt
gctgagggggaatctgaccttgaagagatcgaggaagacgtggagcaggcttctcagagc
tcctggcaggaagagagccccaaagaacaggagcagctgccacaggtcccaaagtgtgaa
gaccaccaggcaacccaaagcccagcctccaggatgtcctctgaggacctggctccatac
ctgggggagagatggaagagggaggataaccctcaggtccctgctgagggagtggatgac
acaagctcctccgagggcagcacggtggactgcccggacccagaggagatcctgaggaag
atccctgagctggcggatgagctggacgaacccgatgactgtttcacagaaggctgcact
cgatgttgtccctgctgcaaagtgaataccagtaagtctccttgggccacgggctggcag
gtgcgcaagacctgctaccgcattgtggagcacagctggtttgagagtttcatcatcttc
atgattctgctcagcagtggagcgctggcctttgaggataactacctagaagaaaaaccc
cgagtgaagtccatgctggagtacactgacagagtgttcaccttcatctttgtgttcgag
atgttgctcaagtgggtagcttatggcttcaaaaaatatttcaccaatgcctggtgctgg
ctggactttctcatcgtgaatatctctctgacaagtctcatagcaaagatccttgaatat
tcagacgtggcatccatcaaagcccttcggactctccgtgccctccgaccgctgagggct
ctgtctcgatttgaaggcatgagggtagtggtagatgccttggtgggcgccatcccctcc
atcatgaacgtcctcctcgtctgcctcatcttctggcttatcttcagcatcatgggcgtc
aacctcttcgcagggaagttttcaagatgtgtcgacaccacaaacaacccattttccctc
gtgaattcgacaatcgtggataacaagttggcatgtcacaatcaaaacaccactggccac
ttgttctgggttaacgtcaaagtcaactttgacaatgtcgctatgggctacctcgcgctt
ctccaggtggcaaccttcaaaggctggatggatattatgtatgcagctgtggattcccgg
gaggtcgacagtcagcccaattgggaggaaagcctgtacatgtacctatatttcgttgtc
ttcatcattttcggtggcttcttcacgctgaatctctttgtcggggtcataattgacaac
ttcaatcaacagaaaaaaaagctagggggccaggacatcttcatgacggaggagcagaag
aagtattacaatgccatgaagaagctgggctccaagaaaccgcagaagcccatcccacgg
cccctgaataagtaccagggcttcgtgtttgacatcgtgaccaggcaagcatttgacatc
accattatggttctcatctgcctcaacatggtcaccatgatggtggagacggacgatcag
agcaaggagaagacaaacgtcctgggcaaaatcaaccagttcttcgtggccgtcttcacg
ggcgagtgtgtgatgaagatgttcgccctgcggcagtactacttcaccaacggctggaac
gtattcgacttcatagtggtgattctgtccattgggagtctggtgttttctgcaatcctt
acgtcactagaaaattacttctccccgacgctcttccgcgtcatccgtctggccaggatc
ggccgcatcctcaggctgatccgagcagccaaagggattcgcacactgctcttcgccctc
atgatgtcgctgcccgccctcttcaacatcggcctcctcctcttcctcgtcatgttcatc
tactccatcttcggcatggccagcttcgctaatgttgtggatgaggctggcatcgacgac
atgttcaacttcaagacctttggcaacagcatgctgtgccttttccagatcaccacatcg
gctggctgggacggcctcctcagccccatcctcaacacaggacccccctactgcgacccc
aacctgcccaacagcaacggctccgtcacccgagacaactgtgggagcccagcggtgggt
atcatcttcttcaccacctacatcatcatctccttcctcatcgtggtcaacatgtacatc
gctgtgattctggagaacttcaatgtggccacagaagagagcacggagcccctgagcgag
gacgacttcgacatgttctatgagacctgggagaagttcgacccggaggccacccagttc
attgccttttctgccctctcagacttcgcagacacgctctctggccctcttagaatcccc
aaacccaatcggaatatattaatccagatggacctgccgttggtccctggagataagatc
cactgtttggacatcctttttgccttcacaaagaatgtcttgggagaatctggggagttg
gattctttgaagattaatatggaagagaagttcatggcaacgaatctttccaaagcatct
tatgaaccaatagcaaccaccctccggtggaagcaggaagacatctcagccacggtcatt
caaaaggcctatcggagctacatgttgcaacgctccttgacactctccaaccccctgaat
gtgcccagggctgaggaggatggcgtgtcacttcccggggaaggctatgctacattcatg
gcaaatggcagtggtgggctcccagacaaatcagaaagtgcttctgctatgtctttccca
ccgtcctatgacagcgtcaccaagggcctgagtgacagggtcgacgttagcacatctagc
tcaatgtaa
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