Arvicanthis niloticus (African grass rat): 117700455
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Entry
117700455 CDS
T08817
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03030
DNA replication
anu03410
Base excision repair
anu03420
Nucleotide excision repair
anu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117700455 (Lig1)
03410 Base excision repair
117700455 (Lig1)
03420 Nucleotide excision repair
117700455 (Lig1)
03430 Mismatch repair
117700455 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
anu03032
]
117700455 (Lig1)
03400 DNA repair and recombination proteins [BR:
anu03400
]
117700455 (Lig1)
Enzymes [BR:
anu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117700455 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
117700455 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117700455 (Lig1)
DNA replication proteins [BR:
anu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117700455 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117700455 (Lig1)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117700455 (Lig1)
NER (nucleotide excision repair)
Other NER factors
117700455 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
117700455 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
117700455
NCBI-ProteinID:
XP_034348221
EnsemblRapid:
ENSANLG00005020756
LinkDB
All DBs
Position
Unknown
AA seq
932 aa
AA seq
DB search
MRKKEQERKGETSAANMQKSIMSFFQPTKEGKGKKPEKETPSSIREKELPPKVALKERNR
VVPESDSPVKRPGRKVTQVLSSEGEDEDEAPCTPNVQKPVPDSKQSSPPSSDTCPENSPL
FNPSMDISPSGFPKRRTARKQLPKRTIEDTLEEQNEDKDKAAKKRKKEEETQTPTESLTE
AEEVKQKAEKERDQPIVAHGPTKSPESVTLTKTENIPMCKAGVKQKPQEEEQSKPPARGA
KTLSSFFTPRKPAVKTEVKQEESGTPRKEETKGTLDPTNYNPSKNNYHPIEDACWKHGQK
VPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPSDLLPVLYLSLNRLGPPQQGLE
LGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTISGVFT
KFCDIARLTGSASMAKKMDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALAQA
VSLTPPGQEFPIAVVDAGKGKTAEARKMWLEERNMILKQTFCEVPDLDRIIPVLLEHGLE
HLPEHCKLSPGVPLKPMLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLEDGEVKI
FSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKDV
DASEIQVQVCLYAFDLIYLNGESLARQPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQ
IAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYL
GRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHYQSLQALVLPSPRPYVRI
DGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVREDKQPEQ
ATTSDQVASLYRKQSQIQNQQSSDLDSDVEDY
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaaagagcaagagaggaaaggagagacttctgctgccaacatgcagaaaagt
attatgtcattttttcaacccacaaaagaaggtaaagggaagaagccagagaaggagaca
cccagcagcatcagagagaaggaactccctccaaaggtggcgttgaaggagaggaatcga
gtggtacccgagagtgattctccagtgaagagaccaggaaggaaggtaactcaggtcctg
agcagtgaaggagaggacgaagatgaagccccttgcacccccaacgtccaaaagcctgtg
ccagactccaaacagagctctcctcccagctctgacacatgtcctgagaacagtcctctt
ttcaacccctccatggacatctccccatcaggattcccaaaacgtcgaactgcacggaag
cagcttcccaaacggacaattgaggacactctcgaggagcagaatgaagacaaggacaaa
gcagctaagaaaaggaagaaagaagaagaaacacagaccccaacagaaagcctcacagag
gctgaagaggtaaaacagaaggcagaaaaggagagggaccagcccatagtagcccatggg
cccaccaagtcccctgagtcagtaaccctgacaaagacagagaatattccaatgtgtaag
gcaggtgtgaaacagaagcctcaggaagaggaacagagcaagcctcctgccagaggtgcc
aagacactgagcagtttcttcacaccccgaaaaccagcagtgaaaactgaagtcaaacaa
gaagagtcaggcactccaaggaaagaagagaccaagggaaccctggatccaacaaattat
aatccttccaaaaataactaccatcccattgaagatgcctgctggaaacatggccagaag
gtccctttcctcgctgtggcccggacatttgaaaagattgaggaggtttctgctcggctc
aagatggtggagacactgagcaacctgctgcgctctgtggtggccttgtccccttcagac
ctgctccctgttctctatctcagcctcaaccgcctcgggccgcctcagcagggactagag
ctgggtgttggtgatggtgtcctcctcaaggcagttgcccaggccacaggtcgtcagctg
gagtccattcgggctgaggtagctgaaaagggggatgtgggtctcgtggccgagaacagc
cgcagcactcagagactcatgctgcctccacctccacttaccatttctggagtctttacc
aaattctgtgacattgcccggctcactggcagtgcttccatggccaagaagatggacatt
atcaagggcctttttgttgcctgccgccactcggaagcccggttcattgccaggtcccta
agtgggcggctgcgccttgggctggctgagcagtcggtgctggctgctcttgcccaggct
gtgagcctcacaccccctggccaagaatttcccatagccgtggtggatgctgggaagggc
aagacagcagaggccaggaagatgtggttggaagaacgaaacatgatcttgaagcagacc
ttctgtgaggtgcctgacctggatcgaatcatccctgtgctcctggaacatggcctggaa
catctcccagagcactgcaagctgagcccaggggtccctctgaaaccaatgctggcccat
cccactcggggtgtcagcgaggtcctgaaacgctttgaagaggtcgactttacctgcgag
tacaagtacgatgggcagagggcacagatacacgttctggaagatggagaagtgaagatc
ttcagcaggaaccaggaagacaacacaggaaagtatcctgacattatcagccgcatcccc
aagattaaacacccctcagtcacatctttcattctggacactgaggctgtggcctgggac
cgggaaaagaagcagatccagccattccaagtgctcactacacgcaagcgcaaggatgtt
gatgcatcggagatacaggtgcaagtgtgtctgtatgcttttgacctcatctacctcaat
ggagagtccttggctcgccagcccctgtctcgacgccggcagctgctcagggagaacttt
gtggagacagagggtgaatttgtctttgccacctccttggacaccaaggacatcgagcag
attgctgagttcttagagcaatcagtgaaggactcctgtgagggcctgatggtgaagacc
ttggatgttgatgccacctatgagatcgccaagaggtcacacaattggctcaagctgaag
aaggactaccttgatggtgtgggtgacactctggaccttgtggtgattggtgcctacctg
ggccgggggaagcgagctggccggtatgggggcttcctgttggctgcctacgatgaggag
agtgaagagctgcaggccatatgcaagctgggaactggattcagcgatgaggagctagag
gaacattaccagagcctgcaggccctggtattgccttctcctcgcccctatgtgaggatt
gatggggcagtggcccccgaccactggctggacccaagcgttgtatgggaggtgaagtgt
gctgatctctccctgtcccccatctaccctgctgcacggggcctggtggacaaagagaaa
gggatctctcttcgtttccctcggttcattcgtgtccgtgaagacaagcagccagagcag
gccactaccagcgaccaggtggcctctttgtaccggaaacagagtcagattcagaaccaa
caaagttcagacttggactccgacgttgaagactattaa
DBGET
integrated database retrieval system
