Arvicanthis niloticus (African grass rat): 117713845
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Entry
117713845 CDS
T08817
Symbol
Vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu04140
Autophagy - animal
anu04148
Efferocytosis
anu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117713845 (Vps41)
04148 Efferocytosis
117713845 (Vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117713845 (Vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
anu04131
]
117713845 (Vps41)
Membrane trafficking [BR:
anu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117713845 (Vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
ANAPC4_WD40
Vps39_1
Vps39_2
zf-RING_5
Frtz
RIG-I_C
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
117713845
NCBI-ProteinID:
XP_034366236
EnsemblRapid:
ENSANLG00005013242
LinkDB
All DBs
Position
8:complement(42686682..42840191)
Genome browser
AA seq
853 aa
AA seq
DB search
MAEAEEQETESLEESTDESEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALG
THYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKLQVFGLYSGEEFHE
TFDCPIKIIAVHPQFVRSSCKQFVTGGKKLLLFERTWMNRWKSSVLHEGEGNIRSVKWRG
HLIAWANNMGVKIFDITSKQRITNVPRDDISLRPDMYPCSLCWKDTVTLIIGWGTSIKIC
SVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREYCAR
PRLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYVVSPRDVVIAKERD
QDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYVNHLVERGEYDMAARKCQKI
LGKNASLWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLVR
EWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQ
LIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKL
FKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLS
RMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMK
GVLVDEENICESCLSPILPTDAAKPFSVVVFHCRHMFHKECLPMPSLNAPAQYCNICSAK
TRGPGSAVLEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcagaggagcaggaaactgagtctcttgaagaatctacagatgagtcagag
gaagagagtgaagaggaacccaaactgaagtatgaaagactttccaatggggtgacagag
attcttcagaaggatgcagcaagctgtatgacagtccatgacaagtttttggcactgggt
acacattatggcaaggtttatttacttgacgtccagggaaacatcactcagaagtttgat
gtaagtcctgtgaagataaaccagatcagcttggatgaaagtggtgaacacatgggagtg
tgttcagaggatggcaagctgcaggtctttggactgtattctggagaagagtttcacgag
actttcgactgtcccattaaaatcattgccgtgcacccacagttcgtgagatccagttgt
aagcagtttgtgaccggcgggaaaaagttgctgctatttgaacggacatggatgaacaga
tggaagtcttctgtcctacacgaaggggaagggaacataaggagtgtgaagtggagaggc
catctcattgcttgggccaacaatatgggtgtgaagatttttgacatcacctcaaagcaa
agaatcaccaatgttccccgagatgatataagtcttcgcccagatatgtatccctgcagc
ctctgctggaaggacactgtgacactcattattggctggggaacttccatcaagatatgc
tcagtgaaggaacgccacgccagtgagatgagggatctgccaagtcgatatgttgaaata
gtgtctcagtttgaaactgagttctacattagtggacttgcacctctctgtgatcagctt
gttgtactttcctatgtaaaggaggtttcagaaaaaacggaaagagaatactgtgcaaga
cctagactggacatcatccaaccacttccagagacttgtgaagagatctcatctgatgct
ttgacagtcagaggctttcaggagaatgaatgtagggattaccacttagaatactctgaa
ggggaatcactcttctacgtcgtgagtccaagagatgtcgtcatcgccaaggaacgagac
caggatgatcatatcgactggctccttgagaagaagaaatatgaagaagctttgatggca
gctgaaattagccaaaggaacattaaaagacataagatactggatattgggttggcatat
gtaaaccacctggtggagagaggagagtatgacatggctgcacgaaaatgccagaaaatt
cttgggaaaaatgcatccctctgggaatacgaagtttacaaatttaaagaaattgggcag
cttaaagcaattagtccctatttacctcgaggggacccagttctgaaaccactcatctat
gaaatgattttgcatgaatttctagaaagtgattatgagggctttgccacattggtcaga
gagtggcctggagatctgtataacaattctgtgatagttcaagcagttcgagaccacctg
aagaaggacagtcagaacaagactttattgaaaacactggcagaactgtacacctacgac
aaaaattatggcaatgctctggaaatatacttaacattaagacataaagatgtcttccaa
ctgatacacaagcataaccttttcagctccatcaaggataaaattgttttattaatggat
tttgattcagagaaagctgttgacatgcttttggacaatgaagataaaatttcaattaaa
aaagtggtagaagaattagaagacagaccagaactgcagcatgtatatttgcacaagctc
ttcaagagagaccatcataagggacagcgctaccatgagaaacagatcagtctgtatgcc
gagtatgatcgaccaaacctacttccctttctccgagacagtacccattgcccacttgaa
aaggctcttgagatctgtcaacaaagaaattttgtagaagagacagtttaccttctgagc
cgaatgggaaacagtcgaagtgccctcaagatgattatggaggaattgcatgacgttgat
aaagcaattgagtttgccaaggaacaagatgacggagagctctgggaagatctgattcta
tattccatcgacaaaccaccatttatcactggcctgttgaacaacattggcacacacgtg
gacccgattctactcatccatcgaattaaagaaggaatggagattcccaatttaagagat
tccttggttaaaattctgcaagattataacttgcagattctgcttcgggaaggctgcaag
aaaatcctcgtagccgactctttgtcgttgctgaaaaaaatgcaccgaacccaaatgaaa
ggcgttctggtagatgaagagaatatctgtgagtcgtgcctttctcccatcctcccaaca
gatgcagcgaaacccttcagcgtggtggtctttcattgtcggcacatgttccacaaggag
tgcctacctatgccaagcctgaatgctcctgctcagtactgcaacatctgtagtgccaag
acccgtgggcccggaagtgccgtcctggagatgaagaagtag
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