Arvicanthis niloticus (African grass rat): 117722057
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Entry
117722057 CDS
T08817
Symbol
Lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117722057 (Lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
anu03400
]
117722057 (Lig4)
Enzymes [BR:
anu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117722057 (Lig4)
DNA repair and recombination proteins [BR:
anu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117722057 (Lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
117722057
NCBI-ProteinID:
XP_034376897
EnsemblRapid:
ENSANLG00005023186
LinkDB
All DBs
Position
16:complement(4759580..4765580)
Genome browser
AA seq
911 aa
AA seq
DB search
MASSQTSQTVAAHVPFADLCSTLERIQKSKDRAEKIRYFKEFLDSWRKFHDALHKNNKDV
MDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGKDAQKLLNYRTPSGART
DAGDFAMIAYFVLKPRCLQKGSLTIKQVNELLDLVASNNSGKRKDLVKKSLLQLITQSSA
LEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAVELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAVADVQRVEKDMKQQSFYIETKLDGERMQMHKDGALYRYFSRNGYNYTD
QFGESPQEGSLTPFIHNAFKTDVQACILDGEMMAYNPTTQTFMQKGVKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRKRYDILSSTFTPIQGRIEIVQKTVARTKKEVVDALND
AIDQREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMM
SHFLCAVAEAPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHRKSPPSSILC
GTEKPEVYIEPHNSVIVQIKAAEIVPSEMYKTGSTLRFPRIEKIRDDKEWHECMTLGDLE
QLRGKASGKLATKHLHVGDDDEPKEKRRKPISKTKKTIGIIEHLKAPNLSNISKVSNVFE
DVEFCVMSGLDGYPKSDLENKIAEFGGYIVQNPGPDTYCVIAGSENIRVRNIISSDRHDV
VKPEWLLECFKTKTCVPWQPRFMIHMCPSTKQHFAREYDCYGDSYFVDTDLDQLKEVFLR
IRPSEKQTPEEMAPVVADLESRYSWDHSPLSMFRHHTVYLDLYAVINDLSSKIEATRLGV
TALELQFHGAKVVSYLSEGVSHVIVGEDQRRVTDFKILRRTLKKKFKILQERWVTDSIDK
CQLQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcacaaacgtcacagactgttgcagcccatgtcccctttgcagacttatgt
tccacattagaacgaatacagaaaagtaaagaccgtgcagaaaaaatcaggtacttcaag
gagtttttagattcttggagaaaatttcatgatgcccttcataagaacaataaggatgtt
atggactctttttacccagcaatgagacttattctccctcagttagaaagagagaggatg
gcctatggaatcaaagaaaccatgcttgctaagctttacattgaactgctgaatttacca
agagaaggcaaggatgcccagaagctcctgaattaccgaacccccagtggagctcgcacg
gatgctggggactttgcgatgattgcatactttgttttgaagccaaggtgcttacagaaa
ggaagcctaaccataaaacaggtaaatgaactcctagacttagttgccagcaataactct
ggcaaaagaaaagacctagtgaaaaagagccttcttcagttaataacccagagttcagca
ctcgagcaaaagtggctgattcgtatgattattaaagacttaaagctcggtgtcagtcag
caaacaatattttccgtcttccacaatgatgcggttgagttgcacaacgtcaccacagat
ctggaaaaggtttgtaggcaactacatgacccctctgtagggcttagcgacatctctatc
actttgttttctgcctttaagccaatgctagctgctgtagcagatgtgcagcgtgtggag
aaggacatgaagcagcagagtttttacatcgaaactaagctcgatggtgagcgcatgcag
atgcacaaagatggcgcgctgtaccggtacttctccagaaatggttacaactacaccgat
cagttcggtgaatctccacaggaaggctctctcaccccatttattcacaacgcattcaag
acagatgtgcaagcgtgcatccttgacggtgagatgatggcctacaatccaacaacacag
actttcatgcagaagggggtcaagtttgacatcaaaagaatggtcgaagattctgaccta
cagacatgttactgtgtttttgatgtgctgatggttaataataagaagctggggcgtgag
actcttaggaagaggtatgatatccttagtagcactttcacacccatacaaggtcgaata
gaaatagtgcagaaaactgtagctcgtacaaagaaggaagtagtggatgcattaaatgat
gccatagaccagagagaagaggggatcatgatcaaacatcctctgtccatctacaagcca
gacaaaagaggtgaagggtggctgaagattaaaccagagtatgtcaatggattaatggat
gaattagaccttttaattgtggggggctactggggtaaaggttcacgaggtggcatgatg
tctcacttcctgtgtgcagtggcagaggcgccacctcctggtgacaggccatctgtgttc
cacactctgtgccgtgttgggtcaggttacaccatgaaagaactctatgacctgggcttg
aaattggcaaaatactggaagccttttcatagaaaatctccaccaagtagcattttgtgt
ggcacagagaagccagaagtgtacattgagcctcataactctgtcattgttcagattaag
gcagcagagattgtccccagtgaaatgtacaagaccggctctaccttgcgcttcccacga
atcgagaagatcagagacgacaaagagtggcatgaatgtatgacgctgggtgacttggag
cagctgagggggaaagcatctgggaagcttgccacaaaacaccttcatgtgggtgatgat
gatgaacctaaagaaaagaggcggaagcccatctccaagacaaagaaaaccattggaatc
attgaacatttaaaagctcctaacctttctaacataagcaaagtttctaatgtatttgaa
gatgttgaattttgtgttatgagtggattagatggttatccaaagtctgacctagagaac
aaaattgcagaatttggtggttatatagtacagaatccaggcccagatacatattgtgtg
atagcaggttctgagaacattagagtgagaaacataatttcttcagatagacacgatgtt
gtcaagcctgagtggcttttggagtgttttaaaacaaaaacatgcgtgccatggcaacct
cgctttatgattcacatgtgcccatcaacaaagcagcattttgcccgtgaatatgactgc
tacggtgatagctattttgttgacacagatttggatcaactgaaagaagtgtttttaaga
attagacccagtgagaagcagactcctgaggaaatggcccctgtggttgctgacttagaa
agccgttactcctgggaccactctcccctcagtatgtttcgacatcacactgtctacttg
gacttgtatgctgttattaatgacttgagttccaaaattgaagccacaagattaggtgtt
acagcactcgagctgcagtttcatggagcaaaggtggtttcctacttatctgaaggggta
tctcatgtaatcgtcggggaagatcaaagacgagttacagactttaaaatactcagaaga
acgcttaagaaaaagtttaaaatcctgcaagaacgttgggtgacagattcaatagacaag
tgtcaacttcaggaggaaaaccagtatttgctttag
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