Arvicanthis niloticus (African grass rat): 117722861
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Entry
117722861 CDS
T08817
Symbol
Podnl1
Name
(RefSeq) podocan-like protein 1 isoform X1
KO
K25038
podocan-like protein 1
Organism
anu
Arvicanthis niloticus (African grass rat)
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
anu00535
]
117722861 (Podnl1)
Proteoglycans [BR:
anu00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class V
117722861 (Podnl1)
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRR_6
LRR_9
Motif
Other DBs
NCBI-GeneID:
117722861
NCBI-ProteinID:
XP_034377999
EnsemblRapid:
ENSANLG00005016329
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Position
18:11673829..11680516
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AA seq
568 aa
AA seq
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MRSQELLLLFLMLKWPAAHMEDPAFPHLGDSSQPLPRPCPWRCSCPRDDTVDCAGLDLRV
FPDNVPRAARHLSLQNNHLQELPYNELSRLSGLRTLDLHSNFISSEGLPDEAFESLTQLE
NFYVAHNKLSVTPQFLPRSLRVADLAANEVVEIFPLTFGEKPALRSVYLHNNRLKNTGLP
PNSFHGSEAITTLSLSSNQLSSLPPSLPASLERLHLQNNLISKVPRGALSLQTQLRELYL
QHNQLTDSGLDAATFSKLSSLEYLDLSHNQLATVPEGLPGTLTILHLGRNCIQHVDAVRL
HRARGLRYLLLQHNKLGASALPAGTLRPLRALHTLHLYGNRLEHVPPALPRRLQALVMPH
NRVATLGARDLVSARALAELNLAYNRLTSAHLHPGAFRRLRALRSLDLAGNQLTRLPDGL
PTSLRSLRLQRNQLRTLEPEQLAGLNKLRELSLAHNRLRVGDIEPGTWHELQALQVLDLS
HNELSFVPPDLPEALEELHLQANRISHVGPEAFLSTPHLRALFLRANRLHVTSIAAEAFQ
GLAYLRVVDTAENPEQVLVQLPHKGKEP
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctcaagagctgctactgctgttcctgatgctgaagtggccggcagcacacatg
gaggaccctgccttcccacacttgggtgacagctcacagcccctgccgaggccctgtcct
tggcgctgctcctgtccccgagacgacacagtggactgtgctggtctggacctgagggtg
ttcccagacaatgtccccagagctgctaggcacctctccttgcagaacaaccaccttcag
gagctgccctacaatgagctatctcggctcagtggcttgcgcaccctggacctgcatagc
aacttcatctcctccgagggcctgcctgatgaggcctttgagtctctcacccagctagag
aacttctatgtggcccacaacaagctttctgtcacgccccagttcctgccacgctccctg
cgtgtcgccgatctggctgccaatgaagtggtggagatctttcctctcacctttggggag
aagcctgcactccggtctgtgtacctccacaacaacagactgaagaacaccgggttacca
cctaactctttccatgggtcagaggctattactaccttgagtctttccagcaaccagctc
agctccctaccacccagcttgccagcctccctggagcggcttcacctgcagaacaatcta
atctccaaggtgcccagaggagcactgagtctccagacccaactccgtgagctgtatctc
cagcacaatcagctgacagacagtggcctggatgcagctaccttcagcaagctgagcagc
cttgagtacctggacctgtctcacaaccagctggccacagtacccgagggtctgccggga
actctgaccatattacacctgggtcgcaactgcatccagcatgtggacgctgtaaggctg
catagagcaaggggtctgcgctacctgctgctgcagcacaataagctgggggcctcggcg
ctgcctgcagggacgctgaggccactgcgagccctgcacacgttgcacctctatggcaac
aggctggagcatgtgcctcccgcattgccccgccgcttgcaggccctggtgatgcctcac
aaccgcgtggccaccttgggtgcacgggatctggtctccgcgcgagccttggccgagctc
aacctggcctacaatcgcctgaccagcgcacacttgcatcccggcgccttccgccgcctg
cgcgccttgcgcagcttggacctggccggtaaccagttgacccggctgcccgacggcctg
cccaccagtttgcgctcgctgagactacaacgcaatcaactgcggaccctggagccagag
cagctcgccggcctgaataagttgcgggagctgagtttggcgcacaaccggctccgcgtg
ggcgacattgagcctggcacctggcacgagctgcaggcactgcaggtactggacttgagc
cacaatgagctatcttttgtgccccctgatctgcctgaggccctggaggagctacacctg
caggctaaccgtatcagtcatgtgggcccagaggccttcctcagcaccccccacctgcgt
gccctctttctcagggctaacaggcttcatgtgacaagcatcgcagccgaggccttccag
gggcttgcatacctacgtgtggtagacactgcagaaaacccggagcaggtcctagtccag
ctgccacacaagggcaaggagccctga
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