Arvicanthis niloticus (African grass rat): 117725038
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Entry
117725038 CDS
T08817
Symbol
Trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
anu
Arvicanthis niloticus (African grass rat)
Pathway
anu05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
anu00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
117725038 (Trim71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
anu03019
]
117725038 (Trim71)
04121 Ubiquitin system [BR:
anu04121
]
117725038 (Trim71)
Enzymes [BR:
anu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117725038 (Trim71)
Messenger RNA biogenesis [BR:
anu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117725038 (Trim71)
Ubiquitin system [BR:
anu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117725038 (Trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
zf-C3HC4
zf-RING_5
zf-RING_UBOX
COG5_N
Motif
Other DBs
NCBI-GeneID:
117725038
NCBI-ProteinID:
XP_034380881
EnsemblRapid:
ENSANLG00005018730
LinkDB
All DBs
Position
21:complement(34910017..34960269)
Genome browser
AA seq
855 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSSSSASSSSSQTSTSSAGGGGPGAAARRLHVLPC
LHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLD
AVVATADEPPPKNGRAGGGPGGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLL
RRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAASAAQQ
LGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTLGRHGGHSFAY
LQDVLQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVQAVTARHKK
ALEDRECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLA
RDRMLAQVQELKTIRGLLQPQEDDRVMFTPPDQALYLALKSFGFVSSGAFAPLTKATGDG
IKRALQGKVASFTVMGYDHDGEPRLSGGDLMSVVVLGPDGNLFGAEVSDQQNGTYVVSYR
PQLEGEHLVSVTLYNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVS
VDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKD
NHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVF
LNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQ
FLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPDG
LIVVVDFGNNRILIF
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccctgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggt
tcgcccgcgcctctctcctccagctcgtccgcctcgtcgtcgtcctcgcagacgtccacg
tcgtcggcgggcggtggcggcccgggcgcggcggcacggcgcctgcacgtcctgccttgc
ctgcacgccttctgccggccgtgcctcgaggcgcaccggttaccggctcccggcggcgcc
ggccctgccgaggcgctgaagctgcgctgccccgtgtgtgaccagaaggtggtcttggcc
gaggcggcgggcatggacgcgctgccgtcgtccgcctttctgctcagcaacctgctggac
gccgtggtggccacggccgacgagccgccgcccaagaacgggcgcgcgggcggcggcccc
gggggcgcgggcggccacagcaaccaccggcaccacgcgcaccacccggcccagcgcgcc
gccgctccagcgccgcagccgccgcccggcccggccgcctcccccgggtcgctgctgctg
cggcggccgcacggttgcagctcctgcgacgagggcaacgccgcctcgtcgcgctgcctc
gactgccaggaacacctgtgcgacaactgtgtccgcgcgcaccagcgcgtacgcctcacc
aaggaccattacatcgagcgcggcccgccggggcctgcggccgcctccgcggcacagcag
ctggggctcgggccgccctttgcaggcgcgcccttctccatcctctcggtgttcccggag
cgcctcggcttctgccagcatcacgacgacgaggtactgcatttatactgtgacacctgc
tctgtccccatctgcagagagtgcacgctgggccgccatggtggccacagtttcgcctac
ctccaggatgttctgcaggactcccgagcactcaccatccagctgctggctgatgcccag
cagggccgccaggctatccagctgagcatcgagcaggcacagactgtggcagaacaggtg
gagatgaaggcgaaagtggtccagtcggaggtccaggccgtcacagctcgccacaagaag
gctctggaggatcgtgagtgtgagctgttatggaaggtggagaagatacgccaggtgaag
gcgaagtctctatacctgcaggtggagaagctgcggcagaacctcaacaagctggagagc
accatcagtgctgtccaacaggtcctggaagagggccgagccctggacatcctgctggcc
cgagacaggatgctggcccaggtgcaggagctcaagaccatccggggcctcctgcagccc
caagaagatgatcgtgttatgttcacgccccctgaccaggccctgtaccttgccctcaag
tctttcggctttgtcagcagtggggcttttgccccgctcacaaaggctacaggagatggc
atcaaacgagcccttcaggggaaggtggcctccttcactgtcatgggctatgaccacgat
ggtgaaccccgcctctcaggaggtgacctaatgtcagttgtggtccttggccccgatgga
aacctgtttggtgcagaagtgagcgaccagcagaatgggacttacgtagtgagctacagg
ccccagcttgagggtgagcacttggtgtcggtgacactgtacaaccagcatatagagaac
agccccttcaaggtagtggtcaagtcaggccgcagctacgtgggtatcgggctccccggg
ttgagcttcggtagtgaaggtgatggtgagggcaagctgtgcaggccctggggtgtgagt
gtggataaggagggctatatcatcgtggctgaccgcagcaataaccgaatccaggtgttt
aagccctgtggctccttccaccacaagtttggtaccctaggttctcggcctgggcagttt
gatcgaccagctggcgtggcctgtgacgcctcccgcaggatcgtggtggccgacaaagac
aatcatcgaattcagatcttcacctttgagggccagttccttcttaagtttggtgagaaa
ggaaccaagaacgggcagtttaactacccatgggatgtagcagtgaattctgagggcaag
atcctagtttcagacacccgaaatcatcgcatccagctgtttggaccagatggggtcttc
ctgaataagtacggcttcgaggggtctctctggaagcactttgactctccacggggcgtg
gctttcaaccatgaaggtcacctggtagtcaccgatttcaacaaccaccgccttctggtt
attcaccccgattgccaatctgcccgcttcctgggctcagagggcactggcaatgggcag
ttcctgcgaccacagggtgtggccgtggaccaggaagggcgaatcattgtagctgactcc
agaaaccaccgtgtgcagatgtttgaagccaacggcagcttcctgtgcaagttcggtgct
caaggcagtggctttgggcagatggaccgcccctcaggtatcgcggtcaccccggatggc
ttgatcgtcgtggtggactttggcaacaatcgaattctcatcttctaa
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