Anaerotignum sp. MB30-C6: RBQ60_08545 Help Entry RBQ60_08545       CDS       T09679                                  Symbol ligD Name (GenBank) DNA ligase D   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism anv  Anaerotignum sp. MB30-C6 Pathway anv03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:anv00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     RBQ60_08545 (ligD)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:anv03400]     RBQ60_08545 (ligD) Enzymes [BR:anv01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      RBQ60_08545 (ligD) DNA repair and recombination proteins [BR:anv03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      RBQ60_08545 (ligD) BRITE hierarchy Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  WMI79894 UniProt:  A0AA51C9N3 LinkDB All DBs Position complement(1709916..1712354) Genome browser AA seq 812 aa AA seqDB search MDKKLWEYQDKRNFTKTLEPKGETASNEESLSFVVQHHLARRDHYDFRLEWAGVLLSWAV PKGPSYDTHDKRLAIHVEDHPLDYKNFEGTIPKGEYGGGIVMLWDEGEWEPYGNVEEGIH KGELKFILKGKRLQGKWAMIRLKGKPDETKENWLFLKERDEFCKTSDGISQFITSIRTGR TMEEIETDAEKKFTPNPFQTCDVQLAQLVNKVPEGEGWIYEMKYDGYRIMAFVEGNSARL ITRNGNDYQKRFRDIALSISGWANGRPMVLDGEMVITDASGKTDFQALQNYLKNSKSQKL TYILFDILALDGEDLREQTLLKRKEILEALMKDAPNNLYYSRYVKGQGEESFSVACQAGM EGIIGKKIDSIYSGTRNGDWIKLKCDKRQEFVIGGYTLSDKKAWGVSSLLLGVYEGENLI YTGRAGTGMSENDMKFLEKEFNNIKKADSPFLLPPKSKATEKITWLEPVLVAEIKFAEWT KENLLRQASFKGLRTDKDAKNIKKEKTGNEISSEPSETEGEKAMGDKNSVIIGGVKISNP DKVIYDEPVITKADVVRYYEGVSSRMLPYLSHRVLTAVRCPKGISQTCFYKKHPAADSKE IITIPISNSKGEVEEYFYIETVKGILSEVQMGTLEFHTWGSTVDTLEKPDMMVFDLDPDE GMELDQVRQGVEDVRSILNELSLNSYLKTSGGKGYHVVVPLKPIANWDAFHDFAKGVAEV MEQKWPDRYTSNVRKANRKGRIFIDWIRNGRGATSVAPYSLRGRKGAAVSMPIPWEELHT VTPDGINMTEALMRVKGDDPWKGFFQNNQMLK NT seq 2439 nt NT seq  +upstreamnt  +downstreamnt atggataagaaactatgggaatatcaagataaaaggaattttacgaaaactttagaacca aaaggagaaacagcaagtaacgaagaaagcctaagctttgtggtgcaacaccatttagca cgcagggaccattatgattttcgcttggagtgggcaggggttcttctaagttgggccgta cccaaggggccttcctacgatacccatgataaaaggcttgccatacatgttgaagatcat cccttggattataaaaactttgaaggaaccattcccaagggagaatacggtgggggcatt gtcatgctttgggatgaaggagaatgggagccttatgggaatgtggaggaagggattcac aaaggtgagctgaaatttatcttaaaaggaaaaagattgcaggggaagtgggctatgatt cgattaaagggtaagcccgatgagacaaaggaaaattggctttttctaaaggaaagggat gaattttgcaaaacttctgatggaatttcacagtttattacaagtatccgaactgggcgt acgatggaagaaatcgaaacggatgcagagaagaaattcaccccaaacccctttcaaact tgtgatgtacagcttgctcaattggtaaataaggttcctgagggagaaggctggatctac gagatgaaatatgatggctatagaatcatggcctttgtagagggcaacagtgcccgactg attacaaggaatggcaacgactatcaaaagcggtttcgagacattgccctttctatatca gggtgggccaatggcagacctatggttttagacggtgaaatggtcattaccgatgcatcg gggaaaacagactttcaggcattgcaaaattacttgaaaaattccaaatctcaaaaacta acatatattctttttgatattcttgccttagatggggaagaccttcgagagcaaaccctg ctcaaaaggaaggaaatccttgaagctttgatgaaagatgcacctaataatctgtattac agccgttatgtcaaaggacagggagaggaaagtttttccgttgcctgccaagctggtatg gaagggattataggtaaaaaaatcgactctatctatagcggaactagaaatggcgattgg attaaattgaaatgcgataaaaggcaggaatttgtgattggcgggtataccctgtctgat aaaaaagcatggggggtaagttccctcttacttggggtttacgaaggtgaaaatcttatc tatacaggccgtgcgggaacaggtatgagcgaaaatgatatgaagtttcttgagaaggag tttaacaatataaaaaaagctgattcacccttcttactcccaccaaaatccaaggcaact gaaaagataacttggttggaaccagtactcgtggctgaaataaaatttgcagagtggaca aaagaaaatttattaagacaagcaagttttaaagggctaaggacagacaaagatgcaaaa aacatcaaaaaagagaaaacggggaacgaaatatcttcagaaccatctgaaacggaaggg gagaaggccatgggcgataaaaacagcgttatcattggaggagtaaagatttcaaatcca gataaagtgatttacgatgaacctgtaatcaccaaagcagatgtggtacggtattatgaa ggggtttcgtctcgaatgttgccctatttgagccatcgggttttaactgcggtacgctgt ccgaaagggatttcacagacatgcttttataaaaaacatcctgcggcagatagtaaagaa atcatcaccatccccatttcaaacagcaaaggagaagtggaggaatatttttatattgag accgtaaaaggaattttatccgaagttcaaatggggactttggagtttcacacttgggga agcacagttgatactctggaaaagccagatatgatggtatttgacctagaccccgatgag gggatggagttagatcaggtgcgtcaaggcgtggaggacgttcggagcattctaaatgag ctttccttaaactcatatctaaaaaccagtgggggcaaaggttaccacgtggttgttcct ttaaagcccatagcgaactgggatgcttttcatgactttgcaaaaggggttgccgaagta atggaacaaaaatggcctgaccgatacacaagcaatgtaagaaaagctaatcggaaggga agaatattcatagattggattcgaaatggaaggggtgctacaagcgttgccccatactcc ttaagagggaggaagggcgctgccgtctcaatgccaattccttgggaggagcttcatacg gtgacaccagatggtattaatatgactgaggcacttatgcgggttaagggtgatgaccct tggaaggggtttttccaaaataatcaaatgctgaagtaa

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