Azoarcus olearius DQS4: dqs_1891
Help
Entry
dqs_1891 CDS
T04423
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aoa
Azoarcus olearius DQS4
Pathway
aoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
dqs_1891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoa03400
]
dqs_1891
Enzymes [BR:
aoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
dqs_1891
DNA repair and recombination proteins [BR:
aoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
dqs_1891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANQ84929
LinkDB
All DBs
Position
2005931..2008576
Genome browser
AA seq
881 aa
AA seq
DB search
MKAHDKRRDEARGMKPGAIAALAEYARKRDFSITAEPPVRGARPRAEGALGFVVQKHAAR
RLHYDFRLELDGTLKSWAIPKGPSLDPRVKRLAVHVEDHPLDYADFEGRIPQGQYGGGDV
IVWDRGLWQPRDPDPAAAYRAGKLSFHLLGEKLSGGWTLVRTRDGGSGDKAQWLLIKDAD
GAARPQSDYDVVVARPESVLTHAQLPARRDAAGAAGGEGAKKARVAALRGDAARNPAWIA
PELATAVEAPPPGEWRYELKFDGYRMLARVENGRARLYTRNHHDWTAKLAPLREAVESLG
ADSAWLDGEVVVTDAHGVPDFQALQNALELGRDVDLRYFLFDLPYLDGEDLRKLPLEARR
ARLRALLGAHDHPRLAYSEDFPVPPQDILASACELRIEGVIGKRAGSPYRSVRSTDWIKL
KCRQRQEFVIVGYSAPQGGRQGFGALLLAVHDEAAGGRLRYAGKVGSGFSGASLKALHQR
MQPLRRPTPALALPVDSSVTRGATWLEPRLLCEVAFAMWTRDGLVRHAVFQGLRDDKPAA
DAVRERALPATAVARIQGDGRDDEDAPAPTAKVPSNGVRAGARRSPGTLAGVAISNPDRV
IDAASGVTKGELATFYCRIGAQLLPHLAGRPLSILRAPTGIDGERFFQRHADKMSMAGVH
LLPPDLDPDGERLMMVDTLEGVVGAAQMGTIEFHTWNATADRIERPDRIVFDLDPDPALP
WSRMVEATRLVLTLLDEIGLDAFLKTSGGKGIHVVVPLARRHDWEALKQFSRAVTRHLAR
ILPQRFADRMGPQNRVGRIFVDYLRNQRAASTVSAYSVRARPGLAVSVPITRQELERIDG
ADQWTVRNLHQRLARLTRDPWEGYANRQVISAAMRAAVAAD
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcacacgacaaacgccgcgacgaagcgcgcggcatgaagccgggcgcgatcgcc
gctttggcggaatacgcccgcaagcgcgacttctcgatcaccgcggagccgccggtgcgc
ggcgcgcggccgcgcgccgagggcgcgctcggcttcgtcgtgcagaagcatgccgcgcgc
cggctgcactacgacttccgcctggaactcgacggcacgctgaagagctgggcgatcccc
aaggggccgagcctggatccgcgggtcaagcgcctggcggtgcacgtcgaagaccatccg
ctcgactacgccgacttcgagggccgcattccgcagggccagtacggcggcggcgacgtc
atcgtgtgggaccgcgggttgtggcagccgcgcgaccccgatcccgcggcggcctaccgc
gccggcaagctcagcttccacctgcttggcgaaaagctctccggcggctggaccctggtt
cgcacccgcgacggcggcagcggcgacaaggcgcagtggctgctgatcaaggatgcggac
ggcgctgcgcggccgcagtcggactacgacgtggtcgtcgcacggcccgagagcgtattg
acccacgcccaactgccagcgcggcgcgatgccgccggcgcggcgggcggcgagggcgcg
aagaaggcccgcgtggcagcgttgcgcggcgacgccgcgcgcaatccggcctggatcgcg
ccggaactcgccaccgcggtggaggcgccaccgccgggcgaatggcgctacgaactcaag
ttcgatggctaccgcatgctggcacgggtggaaaacggccgcgcgcggctctacacccgc
aaccatcacgactggaccgcaaaactggcaccgctgcgcgaggcggtggaaagcctgggc
gcggacagcgcctggctggacggcgaggtggtggtgaccgacgcccacggcgtgcccgat
ttccaggccctgcagaacgcgctggagctggggcgtgacgtggacctgcgctatttcctg
ttcgacctgccctacctggacggcgaggacctgcgcaagctgccgctggaagcgcgccga
gcccgcctgcgcgcactgctgggcgcgcacgaccatccgcggctggcgtattcggaggac
tttccggtgccgccgcaggacatcctcgccagcgcctgcgaattgcgcatcgagggcgtc
atcggcaagcgcgccggcagcccctaccgttcggtccgcagcaccgactggatcaagctc
aaatgccgccagcggcaggagttcgtgatcgtcggctacagcgcaccgcagggcgggcgc
caggggtttggcgccttgctgctggcggtgcacgacgaagccgcgggcgggcgcctgcgc
tacgccggcaaggtcggcagcggtttcagcggcgccagcctgaaggccttgcaccagcgc
atgcagccactgcgccgcccgaccccggcgctggcgctgccggtcgatagcagcgtcacc
cgcggcgccacctggctggagccgcgcctgctgtgcgaggtggcgtttgcgatgtggacc
cgcgacgggctggtgcgccatgcggtgttccagggcctgcgcgacgacaaacccgccgcc
gacgcggtgcgcgagcgcgcattgcccgccaccgccgtggcgcgcattcaaggtgacgga
cgcgatgacgaagacgcgccggcgccgaccgccaaggtgccgtcgaacggcgtccgcgcc
ggcgcgaggcgcagtcccggcacgctcgcgggcgttgcgatcagcaacccggaccgcgtc
atcgacgccgccagcggcgtgaccaagggcgaactcgccaccttctactgccgcatcggc
gcgcagctgctgccccatctggcggggcggccgctgtccatcctgcgcgcgcccaccggc
atcgacggcgaacgcttcttccagcgtcatgccgacaagatgtcgatggcgggtgtgcat
ctgctgccgcccgacctcgacccggacggcgagcgcctgatgatggtggatacgctggag
ggcgtggtcggcgcggcgcagatgggcacgatcgagttccacacctggaatgccaccgcc
gaccgcatcgagcgccccgaccgcatcgtgttcgacctcgaccccgaccccgcgctgccg
tggtcgcgcatggtggaggcgacccggctggtgctgacgctgctggacgaaatcgggctg
gatgccttcctgaagaccagcggcggcaagggcatccacgtggtggtgccgctcgcgcgg
cggcacgactgggaggcgctgaagcagttctcgcgcgcggtcacccggcatctcgcgcgc
atcctgccgcagcgctttgcggaccgcatggggccgcagaaccgggtagggcgcatcttc
gttgactacctgcgcaaccagcgcgcggcgagcacggtgtcggcctattcggtccgtgcg
cgccccgggctggcggtgtcggtgccgatcacccgccaggagctggagcgcatcgacggt
gccgaccaatggacggtgcgcaacctgcaccagcggctggcgcggctcacccgcgacccg
tgggagggctacgccaaccgccaggtgatcagcgccgcgatgcgggccgcggtggcggcg
gactga
DBGET
integrated database retrieval system
