Anaerococcus obesiensis: I6H46_08275
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Entry
I6H46_08275 CDS
T07194
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aob
Anaerococcus obesiensis
Pathway
aob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I6H46_08275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aob03400
]
I6H46_08275 (mfd)
Enzymes [BR:
aob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I6H46_08275 (mfd)
DNA repair and recombination proteins [BR:
aob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I6H46_08275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QQN55850
UniProt:
A0A7T7UTC0
LinkDB
All DBs
Position
complement(1633139..1636633)
Genome browser
AA seq
1164 aa
AA seq
DB search
MNSLINEIYNISQVKEIIENYKKLSPIFLHGLTDESKAHIFQTLFTYTGKTLIIICENEK
KAKLMCDDINSLQDDSCMYFPSTEINYYNIKNLENNNEINRIEVLTKLINEDKFIITTTL
DALRNKLTPRKIFKDKSFKIYIDSELDLREVKKSFIELNYDFTKLVESKGEFSIRGSIID
FWPIEYDNPIRIELFDTEIDSMRFFDKDTQRSLENIDEIIIRPTKELIYDKNDYQKIIEL
IKKDIKNISDSSNSTKLKDKYNQIISYLSDSLYIANEDLITPYRNENFDDFFDYLDKDSI
FLFQDLNRSIDNFSQDKEKSDLDFTNQLENEEIFPSFKNIKIDINKIFTNIKSYPIINSS
SLLKNNNIIKAKKIIELKSIEQENFNKNIENFIFNINSLIKNNEKAIIFASDKKSLESIK
EIFNENNIGNFSIGLDSDLNNTNIILTENSLSRGYIFTDKKINVYSHRDIFGKDKFKNKK
TRKKQVSAKDIINYSDIEIGDYVVHENNGIGIYKGISKIEVNNTKKDYFVIEYKGNDKVF
VPVDQMGLVSKYIGNKGDKPKISSLGSNQWKKAKQRAKKAVDEIADDLVELYAKRSKAKG
RAFSEDTTWQKEFEDSFIYEETDSQVRSINEIKDDMENIKPMDRLLCGDVGYGKTEVALR
AAFKAIMDGYQVCFLVPTTILASQHYSTMKERFKDYPVECALLSRFVSKKEQDKNIKNLK
SGKIDIIVGTHRLLSNDIKFKNLGLLIIDEEQRFGVRHKDKLKKLKENIDVLTLSATPIP
RTLQLSLTGIRDMSTLDEPPERRLPVNTYVLEYDSSIIKRAIEKELDRDGQVYFVYNRVY
NIEKIYNELVELIPDANIAIAHGQMSAKNLEKIMEDFVNGDIDILLATTIIETGMDIQNV
NTIIVYDSDMMGLSQLYQLKGRIGRSSRSSYAYFTYAKGKVLTEIGEKRLKSIKDFSDFG
SGYKIAMRDLELRGAGNILGESQSGQVEAIGYDLYVKFLQQAVNKASGKEFKSSDLNDVY
IDLKVDAYIPESYIEDQGQKIEMYTRISRIETLEDYSFLVEDLIDRYGDIPLMVDNIMYV
SLVKSLADKLGFDEIREVKNEIIISYDDRNKFTFEQLSQINENYHGELSFDLSQNPAFKL
PNKNTKLLDCYELLKVIKNVKEKK
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatagccttattaatgaaatttataatattagtcaagttaaggaaataattgaaaat
tataaaaaattatctccaatatttttacatggcctaactgatgagagcaaggctcatatt
tttcaaactctatttacttacaccggaaaaacattaattattatttgcgagaatgaaaaa
aaagcaaagttaatgtgtgatgacattaattctttgcaagatgattcttgtatgtatttt
ccatcaactgaaattaactattacaatattaaaaatttagaaaataataatgaaataaat
cgaattgaagttttaacaaagcttattaatgaggataagtttataattactactacttta
gatgccttaagaaataaattaactccaagaaaaatttttaaagataagtcatttaaaatt
tatattgatagtgaattagatttaagagaggtaaaaaaatcatttatagaattaaattat
gattttacaaaattagttgagtcaaaaggagaattttctattaggggctcaataatagat
ttttggcctatagaatatgataatcctataagaatagaattatttgatacagaaatagat
tcaatgagattttttgataaagacactcaaagatctcttgaaaatattgatgaaataata
attagaccaacaaaagagttaatttatgataaaaatgattatcagaaaataattgaatta
ataaaaaaagatataaaaaatatatcagattcaagtaattctacaaaattaaaagataaa
tataaccaaataatttcttatctcagtgatagtttatatatcgcaaatgaagatttaatt
actccctatagaaatgaaaattttgatgacttttttgattatttagataaagattcaata
tttctttttcaagatttaaataggtcaattgacaatttttcacaagataaggaaaaatca
gatctagattttacaaatcagttagaaaatgaggaaatatttccatcatttaaaaatatt
aaaatagatataaataaaatttttactaatatcaaatcttatcctataataaattcttca
agtttattaaaaaacaataatataataaaagcaaaaaaaattattgaattaaaatctatt
gagcaagaaaattttaataaaaatattgaaaatttcatttttaatattaattctttaatt
aaaaataatgaaaaagctattatttttgcatctgataaaaaatctctagaaagtataaaa
gaaatttttaatgaaaataatattggaaatttttctattggtctagattctgatttaaat
aatactaatataatcttaactgaaaattctttatcaagaggttatattttcactgacaaa
aaaataaatgtatattctcatagggatatttttggtaaagataaatttaagaataaaaaa
acaagaaagaaacaagtaagcgctaaagatataattaattattctgatatagaaattggc
gattatgtagttcatgaaaataatggtattggtatatataaaggaatatctaaaattgaa
gtaaataataccaaaaaagattattttgtaattgaatacaagggaaatgataaagtattt
gttcctgttgaccaaatgggtttagttagtaaatatattggtaacaaaggggacaagcca
aaaatttcatcacttggaagtaatcaatggaaaaaagctaaacaaagagcaaaaaaagct
gtagatgaaatagcagatgatttggtagaactttacgcaaaaagatcaaaagccaaggga
cgtgcttttagtgaagatacaacttggcaaaaagaatttgaagattcttttatttatgaa
gaaacggatagccaagtaagatctattaatgaaattaaagatgatatggaaaatatcaaa
ccaatggatagacttctttgtggagatgttggttatggaaaaactgaagtagctttaaga
gctgcatttaaagcaataatggacggctatcaagtttgttttttagtaccaactacaatt
cttgcaagtcaacattattctacaatgaaagaaaggtttaaagattatcctgtcgagtgt
gctttattatctagatttgtaagtaaaaaagaacaagataaaaatataaaaaatttaaaa
tcaggtaaaattgatattattgtaggaactcataggttactatcaaatgatataaaattt
aaaaatcttggcttgttaattatagatgaagagcaaagatttggtgtaagacataaagac
aaactaaaaaaattaaaagaaaatattgatgttttaactttgtctgctacgccaattcca
agaaccttacaattatcattaactgggataagggatatgtcaactttggatgaacctcca
gaaagaagacttcctgtaaatacttacgtattagaatatgattcatcaattataaaaaga
gctatcgaaaaagagcttgatagggatgggcaagtatattttgtctataatagagtttat
aatatcgaaaaaatttacaatgaacttgttgaattaataccagatgcaaatattgctatc
gctcatgggcaaatgtctgcaaaaaatcttgaaaaaataatggaagattttgtgaatggg
gatattgatatacttcttgccacaacaatcattgaaactggtatggatatacaaaatgta
aacacaattatagtttatgattctgacatgatgggacttagtcaactttatcaattgaaa
ggacgaataggtcgatcatctaggtcttcttatgcttattttacttatgccaaaggaaaa
gttttaactgaaataggtgaaaaaagattaaaatcaattaaagatttttctgactttggt
agtggttataaaattgctatgagagatttagaacttaggggcgcaggaaatattttaggt
gaaagccaaagtgggcaagtagaagctattggatatgacttatatgttaaattcttgcaa
caagctgttaataaagcaagcggaaaagaatttaaatctagcgatttaaatgacgtatat
attgacttgaaagtggatgcttatattccagaatcttatatagaagatcaaggacaaaaa
atagaaatgtacaccagaatatcaagaattgaaactttggaagactatagttttcttgtt
gaagatttgattgataggtatggagatattccattaatggttgacaatataatgtacgta
tcattggtaaaatcccttgctgataaattaggttttgatgaaattagagaagtaaaaaat
gaaataataatatcttatgacgatagaaataaatttacttttgagcaattatctcaaatt
aatgaaaattatcacggagaactttcatttgacctttcacaaaatccagcttttaaatta
ccaaataaaaatacaaaactgttagactgttacgaattattaaaagttattaaaaatgtt
aaggagaaaaaatga
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