Amphiprion ocellaris (clown anemonefish): 111584357
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Entry
111584357 CDS
T06018
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aoce
Amphiprion ocellaris (clown anemonefish)
Pathway
aoce03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aoce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111584357 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aoce03021
]
111584357 (pcf11)
03019 Messenger RNA biogenesis [BR:
aoce03019
]
111584357 (pcf11)
Transcription machinery [BR:
aoce03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111584357 (pcf11)
Messenger RNA biogenesis [BR:
aoce03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111584357 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
111584357
NCBI-ProteinID:
XP_023149265
Ensembl:
ENSAOCG00000012270
LinkDB
All DBs
Position
Unknown
AA seq
1596 aa
AA seq
DB search
MDCLLISGYGIDKARVGLPGSLSSKMDDSAAREDARRDYQSSLEDLTFNSKPHINMLTIL
AEENVNFAKDIVAIIEAQISKAPATEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSLDPAWPIKPLPPTVNASIHVNPK
FLKQSEEASSPQPAPAKPPPAAPAPQPTPQPPVAVSQSSLTREQLIRQQLLAKQKQLLEL
QQKKIELELEQTKAQLAGGFVLPTTTADTTPTASSTALKPVTQTVPTVRPWIPPQTQPDT
KPSTRDPRLNRSGPPAASQPKEQPSAKKESLSTTGSSHAPTPEKRPPERSTRPEKARTPR
KDVLEEKPKSKSPSPMAKSVQSKSKQAEAEIQKSTDGTKKDPRLRKRTQDKSGDAKDDEL
KEKKRCNDKKERDEAARGADPQRFSKGKLVNGSVTKHNHDDVADRAGGNARTHARKRTRS
RSRSRSPTSSPKRKDRRSPKSRTRSSSLSPSPSHKAGKPRRVRADELQHGKPGREDRLAP
KKNQSDSRRSKRPGEDRHSESRDSHSPRSHDGGGKEAKEATHRWRSGWEENKRLKLSEDT
HAKSGPQRHKPYNTPTRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKSLESGE
ISQEEFLNMAHQIKHLFQYQEEKQQRSEGWDDAADFPIKKQPLLGMPQSTQPRPHEAMDA
AELSYYEHKSKLRKTQVNHRPAGEEWEAEESPEEGEEGAQGEKTGSGRSTGHPPSHKYSR
TPRDRPGERRSKEREQPRPPLTPMIEEYNHGKQFPTLKSLPGLRFRRRVDPKESSEREWT
SPLTERQHYEDREEQKSGYDAPRRYTDSRHPDPRRPEGPPPSGTVVLRNCPSPAGLDSSA
PRFERERLSPLHQKDSADVSPIPRFESPNSEHSDDGPLNLDTPHLPPHPKSILKGPPRVV
PLPGVRQHADSPGHTPPHEGGHPPSRYNGPGHSGPSRSHPPGWYEGGGPGRYDDTQFDGP
HHQGPGRFDGGGPTHHNMPERVDGPGQCEGPHMSHGPIRGGDGMGRFDGPPQGPGRFGPI
GQQPPVRYEGQGPGPGHLEGPMQRFEGPRGFNNMGPGLGSGPMGFQQQRPMRFDGPMRFD
GPARFEGPGQPGPRYDMPHQGGPPHFEYAAGQQGPPRFAPQHNLQPPMRPMAPPIYENPI
APQQNFPMAPQRFAEPMNPQFPAGPMQFPAQPNMQQAGTFNMQPPFSQPAPGPFYNPAAP
AVGMQQPVNLLGNMNQPFLPQTSVPFGQQTPQVVPPENHFGQVDVNDLLSKLISTGIIKP
SQPEATPTSITESSTVAPAAPVVVVEEEEEEQEEEEEEDLPDLTNFSIDDMKQRYESVVT
KLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLMDWIEFE
EIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVKATKDQVGESCEICQEAFETYWV
EEEEDWFLKNAIKVDDKNFHPSCFEDYKNTSSYLDITPSPNKLLTDHPLGAFVKTEEEHE
EKAIVSVKREVEDVELPDIKTKEEEEVLTNQPEEQT
NT seq
4791 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgatcagtggttatggtatcgataaggctcgcgtaggtttacccggg
tctctcagctcaaagatggacgacagcgcggcgagggaagacgcccgccgggactaccag
tcctccctggaagacctgacgttcaacagcaagccgcacatcaacatgctcaccatcctg
gccgaggagaacgtcaacttcgccaaggatatcgtcgcaataattgaagcacaaatcagc
aaggccccagctaccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagagtctgttcaagctacggtcgacgtgggac
gacgtgtttcctctgaagaaactgtatgcgttggacgtgcgggtcaactctctggacccg
gcgtggcccatcaagccgctgccgcccaccgtcaacgccagcatccacgtcaaccccaag
tttttgaaacagtctgaggaggcgtcctcgccacagccggcccctgccaagcccccaccg
gcagcgcccgccccccagccgaccccccagccgcccgtcgctgtcagccagtcgagcctg
acccgggagcagctcatccggcagcagctgctggccaagcagaagcagctgctggaactt
cagcagaagaagattgagctggagctggagcagacaaaagcacagctggctggtggtttt
gtgttaccgaccacgactgcagacacgactccgacagcatccagcacggcgttgaaaccc
gtcacccaaactgttcccacggtacgaccctggatccctcctcagactcagcccgacacc
aaaccatccaccagagacccccgtctgaaccgctctggccctccagctgcctcccaaccc
aaagaacagccttctgctaaaaaagagagcctctccacaacaggcagctctcacgctcca
acacctgagaaaagaccgccggagaggtccacccggccggagaaggcccgcaccccaagg
aaggacgtgttggaagagaagcccaagtccaaatctccatctccaatggctaaaagtgtg
cagagcaaaagcaaacaagcagaggctgagattcagaagtcgactgatggcacaaagaaa
gatcctcgactgaggaaacggacgcaggacaagagcggagacgccaaagatgacgagctg
aaggagaaaaagagatgcaacgacaagaaagaacgagacgaggcagctcggggagcagat
ccacagaggttcagcaaggggaagctggtgaacggctcagtgaccaaacacaaccatgac
gatgtagccgacagggccggaggcaacgcccgaacgcacgccaggaaacgcacccgctca
cggtccaggtcacgctccccgacctcgtccccgaagaggaaggacaggcggtcgcccaaa
agcagaaccaggagcagctccttgtccccgtcgccttcacacaaagccggcaaacctagg
agggtccgtgcagatgaactgcagcacggaaaacccggccgggaagaccgactcgctccc
aaaaagaaccaatcagacagcaggaggtccaagaggccgggagaggaccggcactctgag
tccagagactcccattccccacgaagccacgatggaggaggcaaggaggcgaaggaggct
actcaccgctggaggagcggctgggaggaaaacaaacgtctgaagctttctgaagacact
catgcgaagtccggacctcagagacacaaaccatacaacactccaactcggccgacaacc
cccagaaccccaaagcatcgcctcagcgtggacgccaacctgcagatacccgaagtactg
aactcagcgtccaagaaagacctgctcaggagggccagcaagagtttggagagtggcgag
atctcccaggaggagttcctgaacatggcccaccagatcaaacacttgttccagtatcag
gaggagaagcagcagcgctcggagggctgggacgacgctgctgacttccccatcaagaag
cagccactgctgggcatgccccagtccactcagccccgcccccacgaagccatggacgct
gccgagctgtcgtactacgagcacaagtccaagctgaggaagacgcaggtcaaccaccgc
cctgctggagaggagtgggaggcggaggaaagcccggaggagggcgaggaaggagctcag
ggagaaaagacgggcagtgggcgaagcactggacacccaccgtcacataaatacagccgg
acgccacgggaccgaccaggtgagaggaggagcaaagagcgcgagcagccacgacctccg
ctcacccccatgattgaagaatacaaccacggcaaacagttccccactctgaagtcgctg
ccaggccttcgtttcaggaggagagtcgaccccaaagagtccagtgaaagggagtggacc
tcaccgctgacagagcgccagcactacgaggatcgcgaggagcagaagagcggctacgac
gctccacggaggtacaccgactccagacaccccgaccctcggaggccggagggcccccct
ccgtccggcactgtggtcctcaggaactgtccgagtccagctggtctggactcttcggcc
ccccggtttgagcgtgagcgcctgtcgccgctccaccagaaagactcggcagacgtgagc
ccgattcctcgctttgagagtcccaacagcgagcactcagacgatggacccctaaacctg
gacactcctcacctgccccctcaccctaaatccatcctcaaggggccgccccgcgtcgta
ccgctgcctggcgtccggcagcacgccgactccccgggacacaccccccctcatgaagga
ggacaccccccctctcggtacaacggccccggacactcgggcccctctaggtctcacccc
ccggggtggtacgaaggtgggggtcccgggcgctacgatgacacacagtttgatggacca
caccaccagggccccggcaggttcgatggcggggggccgactcatcacaacatgccagag
agggtggacggccccgggcagtgtgagggcccccacatgtctcatggtccaataagagga
ggagatggcatgggacggtttgatggcccccctcaggggcccggtaggtttggccctatt
ggccaacagccccctgtgaggtatgagggccagggtcctgggccggggcacttagagggc
ccgatgcagcgcttcgaaggtcctcggggctttaacaacatgggccccggtctgggttct
gggccgatgggcttccagcagcagcgtccgatgcgattcgacggcccaatgaggtttgat
ggccccgctcgcttcgagggacccggccagccggggcctcggtatgacatgccccatcag
ggagggcctccgcactttgagtacgccgctggccaacaggggccccccaggtttgctccc
cagcataacctgcagccccccatgaggccgatggctccgcccatctatgagaaccccata
gccccccagcagaacttccctatggccccccaacggttcgcagagcccatgaaccctcag
ttccctgcagggccgatgcagttcccggcgcagccaaacatgcagcaggcgggaaccttc
aacatgcagccgccgttcagccaaccagcccccggccccttctacaaccctgcagccccc
gccgtcggcatgcagcagccggtgaatttactgggaaacatgaaccagcctttcttgcct
cagacctcagtgcctttcggacagcagactccacaggttgtccctccagagaaccacttt
ggtcaggttgacgtcaacgacctgctgtccaaactcatctccaccggcatcatcaaaccc
tcgcagcccgaggccacgcccacctccatcacggaatcttccacggtggctccagcagct
ccagtggtggtggtggaggaggaggaagaggagcaggaggaggaggaagaggaagacctc
cccgacctcaccaacttcagcatcgacgacatgaaacagcgctacgagagcgtggtgacc
aagctgtactcagggaaccagtgctgtctgtgcagcatgcgcttcaccgccgctcagacc
gacatgtacgccgaccacctggactggcacttcaggcagaaccacgccggtaaagtggcc
agcaagaaggtcacacaccgtcgctggtactacagcctcatggactggatcgagtttgag
gagatcgccgacctggaggaacgagccaagagtcagttctttgagaaggagaacgaggag
gaggtgcagaagaaccaggcggctgccaaggagaaggagttccagagcgtcaaagccacc
aaggaccaagtgggagaatcgtgtgagatctgtcaggaggcatttgagacgtactgggtg
gaggaggaggaggactggttcctgaaaaacgccatcaaggtcgacgacaagaacttccac
ccctcctgctttgaagattataaaaacacgtcttcgtatctcgacatcactccgtcgccc
aacaagctgctgaccgaccacccgctgggcgccttcgtaaagaccgaagaagaacacgag
gagaaggccatcgtctcagtgaaacgggaagtggaggatgttgaacttcctgacataaag
acaaaggaggaggaggaggttttaacgaaccagcctgaggagcagacgtag
DBGET
integrated database retrieval system
