Arthrobacter oryzae: Q8Z05_09560
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Entry
Q8Z05_09560 CDS
T09304
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aod
Arthrobacter oryzae
Pathway
aod03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q8Z05_09560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aod03400
]
Q8Z05_09560
Enzymes [BR:
aod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q8Z05_09560
DNA repair and recombination proteins [BR:
aod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q8Z05_09560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WLQ08369
LinkDB
All DBs
Position
complement(2068569..2071169)
Genome browser
AA seq
866 aa
AA seq
DB search
MAGSRERVRVQGRELVVTNLDKVMYPETGTTKADVLAYYTAVAPVLIPAAVNRPATRKRW
VNGVGTAEAPGEMFFQKNLEDSTPGWIPRASIRHKERTNQYPLVNDAATLIWLAQMGSLE
IHVPQWRVDPHGNPMNPDRLVLDLDPGEGAGLAECAEVARLARAILKDVGMDPVPVTSGS
KGIHLYAGLDGTQGSDQISDFAHELARALEADHPDLAVSDMKKTLRTGKVLVDWSQNNAA
KTTIVPYSLRGRLRPTVAAPRTWRELASPALKQLDYREVMRRVKDGKDPFAAVSAGGGNV
QDHPGGDTDGGSPGGRSGSEAGHGTADGGSTDPRLEKYRSMRDPEGTPEPFSADRHRADP
GAGTIRERFVIQEHHASRLHYDFRLERDGVLVSWALPKGVPASGTQNHLAVQTEDHPMDY
LDFAGTIPKGQYGAGTVSIWDHGYYECDKWIAGKEVIATLTGADGGGLGGTKKFALIRTS
RDSDQQHGAEQSQWLIHLMDRKPHAAPPAPRAPSASKNPSASQQEDGAADARPDSSPEAP
PDPALTFSPDISPMLAGAGTTADLRGMDWQFELKWDGVRALIVADATRIRLISRNGNDVS
ASYPELTDRTCWPEQNFIADGEIVAVGPSGRPDFGLLQTRMKLTKAADVARTRAATPVQL
MVFDLLSVAGEDLRRTPLRKRRARLEQLDWPQGRPVHLSEVLDHEVEDLLESARELGLEG
IMAKRVDGRYVSGERSRSWLKLKFERTQEVVVGGWRPGKGSRQNSVGSLLVGIPDGATLR
YVGRVGSGFSDRELTELRLQLDTLARKTSPFTDVPAADASDAHWVSPELVGEVTFGEWTG
GGKLRHPVWRGWRLDKNADEIVAESG
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
ttggccggcagtagggaacgtgtccgggtccagggccgcgaactggtggtcaccaatctg
gacaaggtgatgtacccggagacgggcaccaccaaagccgacgtcctggcgtactacacc
gccgttgctccggttctgatccccgccgcggtgaaccggcccgccacccgcaagcgctgg
gtgaacggagtgggcaccgcggaggcgccgggtgagatgttcttccagaagaacctggag
gactccacacccggctggattccgcgcgcctccatccggcacaaggagcgcaccaaccag
tacccgctggtcaacgacgctgccaccctgatctggctggcccagatgggctcgctggaa
atccacgtcccgcagtggcgcgtggacccgcacggcaatcccatgaacccggaccggctg
gtgctggacctggatccaggcgagggcgccgggctggccgagtgcgccgaggtggcccgg
cttgcccgtgccatcctgaaggacgttggcatggaccctgtgccggtgaccagcggcagc
aagggcatccacctctacgccggcctcgacggcacgcagggctcggaccagatctccgac
ttcgcccacgaacttgcccgtgccctggaggcggaccatccggaccttgccgtcagtgac
atgaagaagacgctccgcaccggcaaagtcctggtggactggagccagaacaatgcggcg
aagaccacgattgtcccctactcccttcgtggccggctccgccccaccgtggccgcgccg
cggacctggcgtgaactggcctcccccgcactgaagcaactggactaccgggaggtcatg
cggcgcgtgaaggacggcaaggatccgttcgcggcggtctccgcgggtggcggcaatgtg
caggaccatcccggcggcgatactgacggcggcagtccgggcggccggtccggcagcgag
gcaggacatggaacggccgacggcggcagcaccgacccgcggttggaaaagtaccgctcc
atgcgggatccggaagggacaccggaaccgttcagcgcggaccggcaccgggcggatccc
ggcgcgggcaccatcagggagcgcttcgtcatccaggagcaccacgccagccggctgcat
tacgacttccggctggaacgggacggcgtcctggtgtcctgggccctgccgaagggagta
cccgccagcgggacccagaaccacctcgccgtccagaccgaggaccaccccatggactac
ctcgatttcgccggcaccatccccaaaggccagtacggcgccggaaccgtcagcatctgg
gatcacgggtactacgagtgcgacaaatggatcgcgggcaaggaagtcatcgccaccctc
acgggggctgacggcggcggtctgggagggacgaagaaattcgcgctgatcaggaccagc
cgcgacagcgatcagcagcacggggcagaacaatcccagtggctcatccatctgatggac
cgcaagccgcacgcggctccgccggcaccccgtgccccgtcagcatcaaagaacccgtca
gcatcacagcaggaggacggggcggctgatgcccggccggattcctcacccgaggccccg
cccgatcccgcactgaccttttcacctgatatctcgccaatgctggctggtgccgggacc
accgccgatcttcgtggcatggactggcagttcgagctgaaatgggacggcgtgcgggcg
ctcattgttgccgatgccaccaggatccggctcatcagccgcaatggcaacgacgtgtcc
gcaagctacccggagctgacggaccgcacctgctggccggagcaaaacttcatcgccgac
ggcgagatcgtcgccgtcgggccttccgggcggcccgatttcgggctacttcagacgcgg
atgaaactgaccaaagcggccgacgtcgccaggacccgggccgccacaccggtgcagctg
atggtgttcgacctgctgtccgtcgcaggtgaggacctccgccggacgccgctcaggaag
cggcgggcgcgcctggagcagctggactggccgcaaggccgaccggtgcacctgtcggag
gtcctggaccacgaggtggaggacctcctggaaagcgccagggaactgggccttgagggg
atcatggccaaacgcgttgacggccgctatgtcagcggcgaacgcagcaggtcgtggctg
aagctcaagttcgagcgcacccaggaagtggtggtgggcggctggcgccccggcaagggg
tcacggcaaaactccgtggggtcgctcctggtgggcatccccgacggcgccaccctgcgg
tatgtgggccgcgtgggcagcggattcagcgaccgggagctgacggaactgcggctgcag
ttggacaccttggcgcggaagacctccccgttcaccgacgtcccggccgccgatgcctcc
gatgcgcactgggtcagtcccgagctggtgggcgaagtgacattcggagaatggaccggc
ggcgggaagctgcggcacccggtatggcgcggctggcgcctggacaaaaacgccgacgag
atcgtggcggaatccggctga
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