Arthrobacter oryzae: Q8Z05_14065
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Entry
Q8Z05_14065 CDS
T09304
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aod
Arthrobacter oryzae
Pathway
aod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q8Z05_14065 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aod03400
]
Q8Z05_14065 (mfd)
Enzymes [BR:
aod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q8Z05_14065 (mfd)
DNA repair and recombination proteins [BR:
aod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q8Z05_14065 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
WLQ05254
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All DBs
Position
3062969..3066616
Genome browser
AA seq
1215 aa
AA seq
DB search
MSLTGPSLTGLRRALAGDTTFARVQAEASRSFGTRSEDYQISAPAGLRAALLAEMSDGLA
ALHDDAGTPLVLAVTATGREAEDLTAALRAFLPADSVAEFPSWETLPHERLSPRSDTVGR
RLSVLRRLAHPATAAGGPLRVVVAPVRAVVQPIVAGLGELKPVTLKVGQEVSFTDVVRSL
SDAAYARVDMVSRRGEFAVRGGMLDVFPPTEDHPIRVEFFGDEVDQMRWFAVADQRSLSS
PGLHHPTELNAPPCREILITPSVMSRAATLKAQLPAAADMLEKIAGGIAVEGMESLAPVL
VDAMVPFVEQLPGGSISVVIEPEKVRTRAHDLAATNEEFLEAAWSTASDGGTAPLDLSSA
ASAALHSASFRSLTETRTSALGHDVSWWSITSLATDEELTPDINVLNLHAREPRGYQGDV
AEMMEFIGSHVRDQWRIVVVTEGPGPAQRLAELFHDADIPCARVDSLDDEPQAGIIEVTT
AAVGRGFVLDGLKLGLLTEADLLGRTSAGSTKDMRRMPSKRRNAVDPLQLVAGDSVVHEQ
HGIGRFVELIQRKVAGGGDGVREYLVLEYAPSKRGAPGDRLFVPTDQLDQVTRYVGGDTP
ALSKMGGADWASTKSKARKAVKEIAGELIRLYSARMASKGFAFGPDTPWQRELEEAFPYV
ETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTL
LAQQHYETFTERFSGFPLRVKPLSRFQASKEAKETAEGVKNGSVDVVIGTHRLLSKDFAF
KDLGLVIVDEEQRFGVEHKEALKKMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLATPP
EERHPVLTYVGPYTEKQTSAAIRRELMREGQVFFVHNRVSTIERTAAKIRELVPEARVEV
AHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISNANTLIVDGADKYGLSQLHQLR
GRVGRGRERAYAYFLYPSEKPLGEVALERLKAVATHNELGAGMQLAMKDLEIRGAGNLLG
GEQSGHIQGVGFDLYIRLVGEAVADFRGEAEEKAAEMKIELPVNAHLPHDYVPGERLRLE
AYRKLASALTNEAIDEVLAELVDRYGEPPLPAQNLIAVARFRVGAREAGLSDVALQGNFI
KFSPAQLPESKTMRLNRMYPGSQSKPALDAVLIPKPKTARIGGRDLQDAEILEWANGVIR
NIFSDADAPLEKTRG
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaccggcccgtcacttacaggccttcgccgcgcgctcgccggagacacaacg
tttgcccgcgtgcaggctgaagcgtcccggagtttcggaacccgcagcgaggattaccag
atcagcgcgccggcgggcctgcgcgcggcgctgttggcggagatgtcggacggcctcgcg
gccctgcacgacgacgccgggacgcccctggtgctggccgtcaccgccaccggccgtgaa
gcagaggacctcaccgcagccctgcgcgccttcctgcccgccgattcggtggctgaattt
cccagctgggagacccttccgcacgagcggctgtccccgcgttcggacacggtgggacga
cgactgtccgtactgcgccgcctggcgcaccccgccacggctgcgggcggaccactccgc
gttgtggtggctcccgtgcgcgcagtggtgcagccgatagtggccgggctcggcgagctc
aagcccgtcacactgaaggtgggacaggaagtgtccttcaccgacgtggtgcgcagcctt
tccgacgccgcctacgcgcgggtggacatggtgtcccgccgcggcgaattcgcggtccgc
ggcggcatgctggacgtcttcccgcccaccgaggaccatcccatccgcgtggagttcttc
ggcgacgaggtggaccagatgcgctggtttgccgtggctgaccagcggtccctctcctcg
cccggcctgcaccaccccacggaactgaacgccccgccgtgccgtgaaatcctgattacc
ccgtccgtgatgtcccgggccgcaacactcaaggcacagctgcccgccgctgccgacatg
ctcgaaaagatcgccggcggcatcgcggtggagggcatggaatccctcgctcccgtgctg
gtggatgccatggtgccgttcgtggagcagctgcccggcgggtccatctcggtggtcatc
gaacccgagaaggtccgcacgcgcgcccacgacctcgccgccacgaacgaggaattcctg
gaagcggcctggtccacggcgtccgacgggggcaccgcgccgctcgatctcagctcggcg
gcgtcggctgccctgcattcggccagcttccgctccctgacggagacccgcacctcggcc
cttgggcacgacgtctcgtggtggtccatcacctcgctggccaccgacgaagagctgacc
ccggacatcaacgtgctcaacctgcacgcccgggaaccgcgcggctaccagggcgacgtg
gcggagatgatggagttcatcggctcgcacgtccgggaccagtggcgcatcgtggtggtc
acggagggccccggccccgcccagcgcctggctgagctgttccatgacgccgacatcccg
tgcgcccgggtggactcgctggatgacgagccgcaggcgggcatcatcgaggtgaccacc
gccgccgtcggacgcggttttgtcctggacgggctgaaactcggcctgctgacggaagcg
gacctgctgggacgcacctccgcggggtccacgaaggatatgcgccgcatgccgtccaag
cgccggaacgccgtggacccgctgcagctggttgcaggggactccgtggtgcatgaacaa
cacggcatcggacggttcgttgaactgatccagcgcaaggtggcaggcggcggggacggt
gtccgcgaatacctcgtcctggagtacgcaccgtccaagcgcggcgccccgggcgacagg
ctctttgtgcctaccgaccagctggaccaggtgacccgttatgtcggcggggacacccct
gccctgagtaagatgggcggggcggactgggccagcaccaagtccaaggcgcgcaaagcg
gtcaaggagatcgccggcgaactcatcaggctgtactccgcccggatggcctccaagggc
tttgcgttcgggccggacacgccgtggcagcgcgagctcgaggaagcgttcccgtatgtg
gagacccctgaccagctgaccaccatcaacgaagtcaaagcggacatggaacgggaaata
cccatggaccggctggtgtccggcgacgtgggctacggcaagaccgaaatcgccgtgcgg
gcggccttcaaggccgtccaggacggcaagcaggtggcagtcctggtgcccaccacgctg
ctggcccagcagcactacgaaaccttcacggaacgcttctccggtttcccgctgcgggtg
aagccgctgtcccgcttccaggcctcgaaggaagccaaggaaaccgccgaaggcgtgaag
aacggatccgtggacgtggtgatcggcacgcaccggctcctatccaaggacttcgcgttc
aaggacctgggcctggtgatcgtggacgaggaacaacgcttcggcgtcgaacacaaggaa
gcgctcaagaagatgcgcaccaacgtcgacgtcctggccatgagcgccaccccgattccg
cgcaccctggagatgtcgctgaccggcatccgtgaaacatccacccttgccaccccgccc
gaagaacgccatccggtgctgacctacgtgggcccgtacacggagaagcagacctccgcc
gccatccggcgcgagctcatgcgtgagggccaggtgttcttcgtccacaaccgcgtgtcc
accatcgagcgcacggccgccaagatccgcgagctggtcccggaagcccgggtggaagtg
gcccacggccagatgtccgaaagccggctcgagcagatcatcgtggacttctgggagaag
cgcttcgacgtgctggtgtgcaccaccatcatcgaaaccggcctggacatctccaacgcc
aacacgctgatcgtggacggggccgacaaatacgggctctcccagctccaccagctgcgc
ggacgcgtgggccgcggccgcgaacgcgcctacgcgtacttcctgtacccctccgagaaa
ccgctgggcgaagtggcgctggaacggctcaaggccgtggccacgcacaacgaactcggc
gccggcatgcagctggccatgaaggacctcgaaatccgcggcgccggcaacctcctgggc
ggcgaacagtccggccacatccagggcgtgggcttcgacctctacatccgcctggtgggc
gaggccgttgcggacttccgcggtgaggccgaagagaaggccgccgaaatgaaaatcgag
ctgcccgtcaacgcccacctgccgcacgattacgtgccaggggaacggctgcgcctcgag
gcctaccgcaaactggcgtccgcgctcacgaacgaagccatcgacgaggtcctggccgaa
cttgtggaccgttacggcgagccgccgctgcctgcgcagaacctgatcgccgtcgcccgc
ttccgggtgggagcccgcgaagccgggctgtccgacgtcgccctgcagggaaacttcatc
aagttctcgccggcccagctgcccgaatcaaagaccatgcggctcaaccgcatgtacccc
ggctcacagtcgaagcccgccctggacgcagtgctcatcccgaagcccaagaccgcccgg
atcggcggccgcgacctgcaggatgccgaaatcctggagtgggccaacggcgtcatccgc
aacatcttctccgacgcggacgctccgctcgaaaaaacaaggggctag
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