Alkaliphilus oremlandii: Clos_2642
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Entry
Clos_2642 CDS
T00607
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aoe
Alkaliphilus oremlandii
Pathway
aoe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Clos_2642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoe03400
]
Clos_2642
Enzymes [BR:
aoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Clos_2642
DNA repair and recombination proteins [BR:
aoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Clos_2642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABW20173
UniProt:
A8MK41
LinkDB
All DBs
Position
complement(2866394..2869918)
Genome browser
AA seq
1174 aa
AA seq
DB search
MTKELLLAPIRNSTDYIQVRKNIESRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTY
NEMEARQIYEDLKFYAGDRAIFLPSKEIMFYNMEATSRNAQEERMKAIETILEGSDCIVV
TAIDTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGD
IIDIFPSSAEMPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAV
ILKLNQDYKNISKKLNQAAKENLKNSLEELSEKLRSLGNFRGVEKLLPYIYEKTTCLLHY
FKDNALFILDEPSRLREKSEGYIEEFKESFKILVERGEVFPGQGKLILSYGEVIDRLKEK
RIVTLSLLPKAIKDFPPKEIINFDTRPMASFHGKLELLGKEIQRLQYKGYKIALIPGTKE
RCLKLLEFLREKEIPAEYLVGEKQDLVTGEVVILSGNLRRGFEYVKNKFAVITDYEIYGV
HKQQRKTNKTKDASPIKSFIDLKVGDYVVHEGHGIGKYIGIEELKVEGVKKDYLKIRYSG
EGFLYVPTDQMDLIQKYIGSDDAPPKLNKLGGSEWAKTKTKVKKAIEDMAGELIKLYAER
EKTKGHAFSPDSDWQKQFEELFPYEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKT
EVAIRAAFKAVGDSKQVAFLVPTTILAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKI
IENIRTGNVDIVIGTHRLLSKDIEYKDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLT
ATPIPRTLHMSMIGIRDMSVIEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYV
YNRVQGIHQVANNLKELVPQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGM
DISNVNTIIIQDADKLGLSQLYQLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKE
FTEFGSGFKIAMRDLEIRGAGNLLGGEQHGHMAAIGYDLYVKLLEETVGEMRGEYTEKFE
DTTIELNVNAYISEKYIGNPSHKIEIYKKIASIRNKEDMYRVEEEIEDRFGDIPLSARNL
LLISYIKSLAKGLKVTAITQKDKEIRIQFKDGSMLKPEGIGNVLHTYHRKVSFNATAEPY
FIYKVLTMDQYKVLMELRDIIEKISGFQTEPSSI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaactacttcttgcaccaataagaaattccacggactacattcaggttcga
aaaaacatagaatcccgcaaaagtcccatagcgctctatggattgaacgatacgcagaaa
tcccatatcgcctacggcatacaggatgaaatcaaaggacaggtatgtatcgtcacatac
aatgaaatggaagcaaggcaaatctatgaagatttaaaattctacgcaggagatcgggcc
atctttcttccatcaaaagagattatgttctacaatatggaagcaacgagccgaaatgcc
caggaagaaagaatgaaagcaatagaaaccatattggagggtagcgactgcatcgtcgtc
actgccatcgatacctttcttcgtctaatgccgcccccaagcgcctatacgaaaaatcaa
atttcttttcaggtgggagatactgttgatctagaaaaggtcatagaaaatcttgtgatg
caaggctacgaaagagaagatattgtggaggaaagagggcagttcagcattcggggagat
attatcgacatattccctagctctgcagaaatgccagtaagggtggagttatttggtgat
gaaatcgattccataaggaattttcaaccagctacccaaagatctttagataaaatagaa
gctgtaaaggtctatgcagcgaaggaaaccaccattgaatccttcgatgttgaagcagtg
attctaaagctgaatcaggattataaaaacataagcaaaaaactgaaccaagccgcaaaa
gaaaacctaaagaacagcctagaggaactatcagaaaagcttcggtccctaggaaatttt
agaggcgtagaaaaactgctgccctacatctacgaaaaaaccacatgtcttttacattat
ttcaaagacaatgcacttttcatcctagacgaacccagtcgcctcagagaaaaatccgag
ggttatattgaagaattcaaggagagctttaagatcctcgtggaaagaggcgaggttttc
cctggacagggtaaactgattctttcctatggagaggtgatcgatcggctcaaggaaaaa
agaatagtgaccctcagcttacttcccaaagccattaaagattttccaccaaaggaaatc
atcaatttcgatacgaggcccatggcttccttccatggaaagctggagcttttgggaaaa
gagattcaacgacttcagtacaaaggctataaaatcgccttaatcccaggaacaaaggaa
agatgcctcaagctgctggaatttttaagggagaaagagattcctgcagagtacttggtt
ggagagaagcaggacttagttacaggagaagtagtgattctcagtggtaatttgcgccga
ggctttgaatacgttaagaataaatttgcagtcataacggattatgaaatatacggggtc
cataagcaacagagaaaaactaataaaacaaaggatgcttcgccaattaaatccttcatc
gacttaaaggttggggactacgtggttcatgaaggccacggcattgggaaatacatcggc
attgaggaattgaaggtagagggcgtcaagaaggactatttaaaaatacggtattctggg
gaaggcttcctctacgtaccgacggatcagatggacctgattcaaaagtatattggaagt
gacgatgcgccgccaaagctaaataaactgggcggtagcgaatgggcaaagaccaagacc
aaggtaaagaaagccatagaagatatggcaggagaattgatcaagctctatgcagaacga
gaaaagaccaaaggccatgctttcagcccggattccgactggcagaagcagttcgaggag
ctattcccttacgaggaaacgccggaccagctaaggtgtatcgaagaagtaaaacaggat
atggaaaaagagagagctatggatcgtctgctctgtggagatgttgggtatggaaagacg
gaagtggctattcgtgctgcctttaaagctgtaggagatagcaagcaggtggcgtttttg
gtgccgaccaccatccttgcacagcagcactataatacctttaagcaaagattttccgat
tttcccattacagtagaaatgctcagtcgatttaaaaatgccacggcacagaaaaagatc
atagaaaatattagaacgggcaatgtggatattgtcatcggaactcatcgactgctgtcc
aaggatattgaatataaggacttaggtttactgattgtcgacgaggaacagcgtttcggt
gtaaagcacaaggaggctttaaagaagctgaaaaagtccattgatgtgctgaccttaact
gcaacgccaatacctcgaacccttcatatgtccatgatcggcattcgagatatgagtgta
attgaagatccaccggaggaaagattccctgtacagacctacgtcctaggttacagtgaa
tccatggtagtggatgccatcagtagagagcttgctagaggtggacaggtgtattacgtc
tataaccgagttcaaggaatccaccaagtggccaataatttaaaagaactggtgcctcaa
ggacgggtagctgttgcccatggtcagatgtcggagcgagaactagagaaaatcatgctg
gaatatatgaatggcgaatacgatatcctagtgagtaccaccatcatagaaacaggaatg
gatatttccaatgtgaataccatcatcatacaggatgcagataagctgggcctctctcag
ctataccaattgagagggcgcgttggaagatcctacagacagggctatgcctatttaatg
tatgaaaaggataaaattctttcagaggttgcagaaaaaagattgaaggccattaaagag
ttcacagagtttggctctggctttaagatcgcaatgcgagaccttgaaatacgaggtgca
ggaaacctattaggcggagagcagcatggccatatggcagccatcggatacgatctctac
gtgaagcttctagaggaaaccgttggcgaaatgaggggagagtatacggagaaattcgag
gatactaccatagagctcaacgtcaatgcttatatttcggagaaatatattggcaatcca
agccataaaatagagatttataaaaaaattgcttccatacggaacaaggaagacatgtac
agggtagaagaagaaattgaggaccgatttggggatattccgttgagtgctcggaatctt
ctcttaatttcctatatcaaatccttggccaaaggtctaaaggttaccgccattacgcaa
aaggataaggaaatacggattcagtttaaggacggcagtatgttaaaaccagagggaatt
ggcaatgtgcttcatacctatcacagaaaagtatccttcaatgccacagcggaaccatat
ttcatctacaaggtgctaaccatggatcaatacaaggttttaatggagctaagggatatt
atagaaaaaattagtggttttcaaacagagccaagttcgatataa
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