Asparagus officinalis (garden asparagus): 109827510
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Entry
109827510 CDS
T05243
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109827510
03015 mRNA surveillance pathway
109827510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109827510
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109827510
mRNA cycle factors
P-body specific factors
109827510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
109827510
NCBI-ProteinID:
XP_020250110
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MKDPLDKTKVVLRHLPPSISQSALMDQIDARFSGRYNWFSFRPGKYSQKNQRFSRAYIDF
QSPEDVVDFAEFFDGHVFVNEKGTQFKALVEYAPSQHVPKVLSKKDGREGTIFKDPEYVE
FLEFISKPVENLPSAEIQLERREAERAGGPKESVITTPLMDFIRQKRAIKSGSQRSSSSG
KLSRRAGGALSSSSISSKRGAEKRRGLTSMYVLRDNGKTNSNVKDKAGYTLVSRKEGQAC
RREVSEEAMDSNESTPIVSGSVEIGKRRVVLLKGKEREASHVSGSSSQQQSATALVRNLN
GSISSKQSQRQEASGRIIRSILSNKGTHQSRSYVGSQSEQQTQAVNSEREKRPPRPPNPR
LNFKDHVIGSAKQLSSPDVDGKRMIDDKSAMSNLHGSVSIVDKNDRRVRNKDRPDRGVWT
PRHSDGVHVNNDNSFSAQQLSDALEGISQQTLGHKNRDEDMDIQTAQRACVSNSMAAYDD
SMTHGEMKLDLQNSNRRAENGLYRHIGRRGSGHGMKDMDGSVNFSEGKPCKRGISAGYGS
HEKQVWVQKSGSGS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcccttggataaaacgaaggtcgtgcttcggcacttgccgccttcgatctcg
cagtcggcgttaatggatcagattgatgctagattctccggccgctacaattggttctcg
tttcgccctgggaaatatagccagaagaatcagcggttttcacgagcctacattgatttc
cagagccccgaagacgttgtagattttgctgaattttttgatggacatgtatttgtcaac
gaaaaaggtactcagtttaaggctcttgtagagtatgcaccatcacaacatgttccaaaa
gtattatctaagaaggatggtcgtgaaggaactatattcaaagatcctgaatatgtggaa
ttccttgagttcatttcaaaacctgttgagaatcttcccagtgctgagattcagttggaa
aggagagaagcagagagagctggcggaccaaaggaatctgtcataacaacacctctgatg
gattttattcgccagaaacgtgcaattaagagtgggtctcagagatcatcatccagtgga
aaacttagtagaagagctggaggagctctgagtagcagctccatttcttccaagcgaggt
gctgagaagagaagaggcctcacttcaatgtatgttttaagggataacgggaagactaat
agtaatgtgaaggacaaggcgggatatacgctagtgtcaaggaaagagggacaagcttgc
agaagagaagtatcagaagaggctatggactcgaatgagtccacacccattgtatctgga
agtgttgaaattgggaaaaggcgagttgtgcttcttaaaggaaaagaaagagaagcttct
catgtttctggtagttcatcacagcagcagagtgcaacagctttggtaagaaacttaaat
ggctcaatttcttctaaacagagccaacggcaggaggccagcggaagaattattcgaagc
atactttccaacaaaggtacgcatcagagtcgatcatatgtgggaagtcagtctgagcag
caaacacaggcagtgaactctgagagagagaagcgtccccctcgtcctcctaatcctcgt
ttaaattttaaggatcatgttataggtagtgcaaaacagttgtcttcccctgatgttgat
ggaaagagaatgatagatgataaatctgctatgagtaatctacatggttcagtatctata
gttgacaagaatgataggcgtgtgagaaacaaagacaggcctgatcgtggtgtttggacc
cctcgtcattctgatggagtccacgttaacaatgacaattctttttctgcacagcagtta
tcagatgccctggaaggaatctctcaacaaacacttggacataaaaacagggatgaagac
atggatattcaaactgctcaaagagcgtgtgtcagtaattctatggctgcatatgacgat
tcaatgactcacggagagatgaaactggatctgcaaaattcaaatagaagggcagagaat
ggtttatataggcatattgggcgtcgtggatcaggacatggtatgaaggatatggatggc
tctgttaatttttctgagggaaagccgtgcaagagagggatttctgcaggttatggttcc
catgagaaacaagtatgggttcaaaagtcaggttctggttcgtag
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