Asparagus officinalis (garden asparagus): 109827847
Help
Entry
109827847 CDS
T05243
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109827847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aof03041
]
109827847
Enzymes [BR:
aof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109827847
Spliceosome [BR:
aof03041
]
Complex A
U2 snRNP components
U2 related factors
109827847
Complex B
109827847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
FeoA
Motif
Other DBs
NCBI-GeneID:
109827847
NCBI-ProteinID:
XP_020250458
LinkDB
All DBs
Position
1:complement(90799415..90808069)
Genome browser
AA seq
1140 aa
AA seq
DB search
MEEPKHRSSREDVERKEDSRRDRDRDRDREKERHREKDKDKHRDRESSEKIAGDRESRRS
ERERSVDEKFRDKHRQKDRDRDRESRHKERERDREREREKEKRARERENERERERERERE
KERVREREREEREREKERERERERERERERERERERERERERRKREERERERERERERER
EDRERAREKRRELERDDDRDLEDSREHDRKRRRRGDSRDRDRERERSSRHREGSEDRRKR
AEEEPEERKKTREEDLEEEQRKLDEEMEKRRRRVQEWQEKRKKEQQEREKTGEANGEEQP
TAGKNWTLEGESDDEETKEMAVDDEAKPNGEEDGAMAVDNGEGVANGDANGEEEIDPLDA
YMNLEVLPEVEKLANTETVVMDVDKSKLGKTAAEGGISNGNQSKNGGKNTMGRIIQGEDS
ESDYEEPENDEAPLEEEDDDEFIKRVKKTKAEKLSIVDHSKIQYPPFRKNFYIEVKEIAK
MSADEVAAYRKQLELKLHGKDVPKPIKTWNQTGLTSKILDTIKKHNFEKPMSIQAQALPI
IMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVPGDGPIALVMAPTRELVQQIHSDI
RKFSKALGINCVPVYGGSGVAQQISDLKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY
LVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG
RSVVNKDIAQLVEVRQESERFLRLLELLGEWYEKGKILIFVHSQDRCDSLFKDLIRHGYP
CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVH
RVGRTGRAGRKGCAITFISEEDERYAPDLVKALELSEQAVPEDLKALAEGFMAKVNQGTE
QAHGTGYGGSGFKFNEAEEEARKAAKKVQAREYGFEEDKSDSDSDDDGVRKAGGDLSQAA
ALAQAAALAAATRAANPAVPAPGVAGQLLNTPGLAIPNATALPSVAALANEATARATALA
AAMHLQQTLGKIQANAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQ
FFPAGKIPAQGERKLYLFIEGPTESSVKKAKAEVKRVLEDLSTQIVSQSGTGQPGKYSVI
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaccgaagcacagatcgagcagagaagatgtcgagaggaaggaagattctcga
agggaccgggatcgagatcgggatcgggagaaagagcggcatcgagagaaggataaggat
aagcacagggatcgcgagtcgtccgagaagatcgccggggatcgcgagtctcggcgctcg
gagagggagagaagcgtcgatgagaagttcagggataagcacaggcaaaaggacagggat
agagatagagaatcaaggcataaggagagggagagggatagagagagggagagggagaag
gagaagagggcaagagaacgcgagaatgagagagaaagggagagggagagggagagggag
aaggagagggtgagggagagggagagggaggagagggaaagggagaaggagagggaaagg
gagagggagagggagagagaaagagagagggagagggagagagaaagagagagggagagg
gagaggaggaagagagaggagagagaaagggagcgggaaagagagcgggaaagagagcga
gaggatcgagagagggcgagggagaagcggagggaattggaacgagatgatgacagagat
cttgaagatagcagagagcatgatcgaaagaggcgaaggagaggggattctcgagatcgg
gatcgagagcgagaacggagcagccgacatcgagaaggcagtgaagatagaaggaagagg
gcagaggaggagccggaggagaggaagaagacccgagaagaggatcttgaagaggagcag
aggaagcttgacgaggagatggagaagaggaggaggagggttcaagagtggcaggagaag
aggaagaaggagcagcaggagagggagaaaacgggcgaggctaatggtgaggaacaacca
actgctggtaagaactggactttggaaggggagtcagatgatgaagaaaccaaagaaatg
gccgtggatgatgaggcgaagcctaatggagaagaagatggtgctatggcagttgataat
ggtgagggtgtggctaatggtgatgctaatggggaggaggaaattgatccgcttgatgct
tatatgaacttggaggtactgccggaagtagagaagctggctaacactgagacagttgta
atggatgtagataagtccaaactgggaaagacagcagctgaaggtgggataagtaatggg
aatcaatcaaagaatggtggaaagaatacaatggggaggattattcagggtgaagattca
gaatctgattatgaggagcctgagaacgatgaggccccattggaagaggaagatgatgat
gagttcattaaaagggtgaagaagaccaaggctgagaaactatcaattgttgaccactca
aagattcagtacccaccatttaggaagaatttctatattgaggtgaaggagatagcaaag
atgagtgccgatgaggttgcagcttataggaaacagcttgagctgaagttacatggaaaa
gatgtgcctaaacccatcaaaacatggaaccaaacaggactaacaagcaaaatcttggat
acgatcaagaagcataattttgagaagccaatgtccattcaagctcaggcgctgcccata
attatgagcggtcgagactgcattggaattgcaaagactggttcgggtaaaacactagct
ttcgtattaccaatgttgagacatattaaagaccaacctcctgttgtgcctggtgacggc
cccattgcacttgttatggctccaactcgagagcttgtccaacaaattcacagcgacatt
aggaaattctccaaggccctgggtataaactgtgtgccagtttatggaggctctggtgta
gctcagcaaattagcgatttaaagcgaggtactgaaattgtagtgtgcactcctggtaga
atgattgatattctttgcactagtggtggtaaaattactaatcttcgtagggttacctat
ttggttatggatgaagctgatcgaatgtttgatatggggtttgaaccccagattactaga
atagttcaaaacacacgaccagatcgtcagacagtgctattttcagctacttttcctcgt
caggtcgaaatactagcgagaaaggtcttgaacaagcctgttgaaatccaggttggagga
aggagtgtcgtaaacaaggatattgctcagctagttgaggtcagacaagaaagtgaaagg
ttcctaaggctcctagagttattaggggagtggtatgagaagggaaaaatccttatcttt
gttcattcacaagacagatgtgattcattgttcaaggacttgattaggcatggttatcct
tgcctctcacttcacggggccaaggaccagacagatcgagaatccaccatttccgatttc
aagagcaatgtttgtaaccttttaatagctactagtgttgctgcccgaggtttagatgtg
aaggagcttgagttggtggtaaactttgatgctcctaatcactacgaagactatgttcat
cgtgtgggccgaactggtcgagcaggccgaaagggttgtgcaatcacgttcatttcagag
gaagatgagagatatgcaccggaccttgtaaaggctctcgaactctctgaacaagctgtg
ccggaagatctaaaggcacttgctgaggggttcatggccaaggtgaaccagggaacagaa
caagcccatggcactggttatggtggaagcgggttcaaatttaatgaggcagaagaagaa
gctagaaaagctgcaaagaaagtgcaggcaagggaatatgggtttgaggaagataagtcg
gattcagattctgatgacgatggagttcgaaaggctggaggtgatctatctcaggctgct
gcacttgctcaagctgctgccttggctgcagcaacaagggctgctaatcctgcagtgcct
gcccccggggttgctggtcagttgctgaatacgcctggtcttgctataccaaatgcaacg
gcacttccttcagtggctgctcttgcgaatgaggcaacagctcgggcaactgcattagca
gctgctatgcatttacaacaaacattgggaaagattcaggccaatgccatgcctgaacat
tatgaagcagagttggagatcaatgatttcccacagaatgctcgatggaaggttacacat
aaggagactttgggtccaatttcagagtggactggggcagcaattactacaaggggtcaa
ttctttcctgcaggtaagattcctgcccaaggagagcgcaagctgtacttgttcatagaa
ggtccaactgaatcttctgttaagaaagctaaagctgaagtgaagcgggttctggaggat
ctctcaacccagattgtatctcaatctggtaccggccaaccaggcaagtactctgtcatt
tga
DBGET
integrated database retrieval system
