Asparagus officinalis (garden asparagus): 109828922
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Entry
109828922 CDS
T05243
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
109828922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aof03400
]
109828922
Enzymes [BR:
aof01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109828922
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
109828922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
109828922
NCBI-ProteinID:
XP_020251503
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All DBs
Position
1:663152..681877
Genome browser
AA seq
938 aa
AA seq
DB search
YLVNWRKGGARTGANAGNFALVAADVLQRRQGLASGGLTIKDVNDALDQLASRENRGEKT
AVLSDLIKKTNAVEMKWILMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKL
KDRSQRHKRQDIEVGKAVRPQLAMRVADAASAWKKLHGKNVVVECKFDGDRIQIHKNGSE
IHYFSRNFLDHLEYAPGMSSIILQNIQVDRFILDGEMLVWDTATNRFAEFGSNQEIAKVA
REGLESDRQLCYVAFDILYVGDTSVIHQSLTERHDLLRKFVKPVKGQLEILIPDGGLNDL
RSPGEPCWSIVAYSVEDVERFFRETIENRDEGIILKDLGSKWEPGDRSVKWMKLKPDYIH
AGADLDVLIIGGYFGSGRHGGEVAQFLVGLAEHSGSSGHPKRFISFCRVGTGLSDEELDA
LTNKLKPYFRKNEYPKRPPRFYEVTNHSKERPDVWIDSPDKSIILSITSDIRTIKSGVFA
APYSLRFPRIQRVRYDKPWHECLDLQSFMDLVHSSNGNTQRPDHGAPQNQISKHLKATKP
VKGEKKNISAIPSHFKQTDVSAIKGETFIFANMMFYFINVPPSYTIDHFHKMVAENGGNF
SMNLNDSVTHCIAAEKKGIKYQAAMRQGDIIHVSWVLDCCAQKRLIHLQPKYFLFLADSS
KSKFQGEIDSFLDYYYWDLDITDMKQIFSNMSGLENLKSISYYKKKYFPMESMCVFQDCH
IFFYEMPIVNKDLRMVSELALRRMRLDITMRGGEDCDNLAHATHLVACSTLGSHNFDELY
KSFPTAERRRLHKKRLHVVMHQWLDDSLAKGKKLPEDAYNLKPDTLQDLEFEESKEDIQV
PSTTSEVERRKVSEPVDTGEKRKRGRPRGANTKRGTAAPKPHRRTRARIGNRAAKLNSDE
ADNINPVDESDGGEADESMEEIQSDLEENDRSEENKEK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
tacctcgtcaactggcgcaagggcggggcccgcaccggtgccaacgccggcaatttcgcc
cttgttgctgccgacgtgctgcaacggaggcaagggctcgcttctggtggattgacgatc
aaggacgtcaacgatgccctcgatcaactggcttcccgagaaaataggggagagaaaact
gctgtcctgtctgaccttattaagaagaccaatgctgtagaaatgaagtggatactgatg
atcattcttaaagatttaaagctaggcattagcgagaaaagcatttttcatgaattccat
cctgatgctgaagacctgttcaatgtcacttgtgacctgaaattagtctgcgagaagctg
aaagatcgcagtcagcgacataagcggcaggatatagaagttgggaaagctgttaggcct
cagctagctatgcgtgttgctgatgctgctagcgcatggaagaagcttcatggaaagaat
gtcgttgtcgagtgcaaatttgatggtgaccgcattcaaatccataagaatggatcagag
atacactacttctcacggaattttcttgaccatttggaatatgcacctggcatgtccagc
atcattttgcaaaatatccaggttgataggtttatattggatggtgaaatgctggtctgg
gacaccgcaactaatcgttttgcagagttcggctccaaccaagaaatagcaaaagtggct
agggaaggattggagagtgatcgtcagttatgctatgttgctttcgatattctttatgtt
ggagacactagcgttattcatcagagcttgacagaacggcatgaccttctacggaaattt
gtaaaacctgtgaagggtcagctagaaattttgattcctgatggcggtcttaacgacctt
cgttcaccaggtgaaccttgctggtctattgttgcttacagtgttgaagatgttgagagg
tttttcagggaaaccattgagaatagagatgaggggattatattaaaagatcttggttcc
aaatgggagcctggtgatcggagtgtaaaatggatgaaattgaagcctgattacatacat
gctggtgcagacctggatgtccttattataggaggatattttggctctggtcgacatgga
ggggaggtagctcagtttttagttggtctcgcggagcattcaggctctagcggtcaccca
aaacgatttatttcattctgtcgtgtcggtacgggtctctctgatgaggagcttgatgct
ctcaccaacaaattgaagccttacttcaggaagaatgaatacccaaagaggccccctcga
ttttatgaagtaacaaatcattcgaaggagaggccggatgtttggattgacagtcctgat
aagtcgattatactttctataacgagtgatatcagaacgattaagtctggggtatttgct
gcgccatatagtttgagattcccacgtattcaacgtgtgagatatgacaaaccatggcat
gagtgccttgatctgcaatcatttatggacttggtacattcaagtaacggaaacacacag
agacctgaccatggagctccgcagaaccaaatctctaaacatctcaaagccaccaaacca
gtgaaaggagagaagaaaaatatttctgccattccttctcatttcaagcagactgatgtc
tcggctataaagggggagacctttatatttgctaatatgatgttctattttattaatgtc
cctccatcttatactattgaccattttcacaaaatggttgctgagaatgggggaaatttc
tcaatgaatctcaatgattcagttacacactgtattgcggctgagaaaaaagggattaaa
tatcaggcagccatgcgtcaaggggatattattcatgtttcttgggtcttggattgctgt
gcacaaaagcggctcatacacctgcaacccaagtatttcctattccttgctgactcttca
aagagcaagttccagggggagatcgattcatttcttgattattattactgggatctagat
atcacggacatgaaacagattttcagcaatatgagtgggttagaaaacctcaaatccatc
agttattacaaaaagaaatattttccaatggaatcaatgtgcgtgtttcaagattgtcac
attttcttctatgaaatgcctattgtgaacaaggacttgagaatggtatcagagcttgct
ctcaggaggatgagacttgacattactatgcgtggaggtgaagactgtgacaaccttgca
catgctacacacttagtggcttgttcaaccctgggatcccacaactttgatgaattatat
aaaagtttcccaactgctgagaggcggaggttgcataagaaaaggttacatgttgtgatg
catcagtggttggatgattccttagcaaaaggcaagaagttgccggaagatgcttataat
ttaaagccagataccttacaggatcttgaatttgaagaaagcaaagaggatatccaggtt
ccttccaccacaagcgaagtagaaaggcggaaagtttcggagccagttgacacaggtgag
aaacggaaaagagggagaccgagaggggcaaacacaaaaagaggaacagcagctccaaag
ccccatcggaggacccgggcaaggataggaaaccgtgctgccaaattaaactcggacgaa
gcagacaacatcaatcctgttgatgaatctgatggtggagaagctgatgaatcgatggag
gaaattcagagtgatttagaggaaaatgatcggagtgaggaaaataaagaaaaataa
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