Asparagus officinalis (garden asparagus): 109831950
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Entry
109831950 CDS
T05243
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109831950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109831950
03036 Chromosome and associated proteins [BR:
aof03036
]
109831950
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109831950
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109831950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
109831950
NCBI-ProteinID:
XP_020255027
LinkDB
All DBs
Position
2:84208401..84225394
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AA seq
1039 aa
AA seq
DB search
MFGSTNPFGQSSSSPFGSPSVFGQTSGSTTSPFAPKPFGSSNPFGSPTGSSMFGTSTGVF
GAPSSTPAFGASSSPAFGSSMPSFGAPSTPAFGSSSSSFGSSSVFGQKPAFGGFGSTPSQ
SSPFGSSFQQTQPAFGSSPFGSTTFGASSQPAFGAASTPAFGSSSTPAFGVASTPAFGAS
STPAFGASSTPAFGSTSTPAFGAASTPAFGSSSTPLFGSTGSAFGVSSTPAFGSTTSSGF
GAPGTSLFGSSSTSAFGATSTPTFGSSSTPAFGASSAPSFSFGSQPSFGQSASTFGSTPF
GATPSPFGTQSSSFGTQTPTPAFGSQGFGQSGFGSQQGSRVVPYSATQEADAGTQPAGKL
ESISAMPAYKDKSHEELRWEDYQRGDKGGPSPSGQPASAISFPAQAQANPFGSTATFGQP
AANPFSSTTSSNPFAPKTPSFGSSGFGASSPSPFGSTFGSSSSSPFGSTSSTTSLFGAPS
STPFGSSSSPSLFGGTTTSAFSSPSLFGSTAGSTSTFSSGLNFGNTQSSGLFQSTTPSLG
QTPSPFGQSTGFQQSTPAFGSSLFSTPSSGFGGGLFNSSSSALSTSTPMGFGQTTPSLST
PFQPSAPAQTFSNFGQTQPALSGGFGGSSSIFGQGTFGQSSVATQSNVVMQPAPVTNPFG
TLPAMPHMSIGRVGSAPSVQYGISSMPVSEKPAPVRISALLTPRHLSQRRIRLPARKYHP
KVDGQMVPFFSDDESATATPKADALFIPRVNPRSLIIRPIEQWPLRPNASKLPQDSPLNG
NGKVSGEPSAPVLDEMSQKYHDESPKQNGHAEEQNNGHTSSSPSKTAEKANGVSQDNHSE
KETDMSYIKISGHRAGEAAIVYEHGAGIEALMPKLRHADYYTEPRIQELAAKERAEPGFC
RRVKDFVVGRRGFGSIKFLGETDVRRLDLEAIVLFNHREVVVYKDESKKPAVGQGLNKAA
EVTLLNIKCVNKKTGQQYTEGPKVEKYKEMLIKKAEEQGAEFVSYDAVKGEWKFRVKHFS
SYEFGDGDEDDKAAGAPFS
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttccacgaatccattcgggcagtcctcgagtagccctttcggctccccgtcg
gtgtttgggcaaacaagtggttcaactactagtccgtttgctccgaaaccattcggctct
tcaaatccatttggttctccgacagggagctcaatgtttggcacatcaactggagtattt
ggagcgccttctagcacgccagcttttggtgcttcctcatcacccgcttttggaagttca
atgccatcctttggtgctccgtcaacacctgcatttggcagttcatcctcttcctttggt
agttcatctgtgtttgggcagaaaccagcctttggaggatttgggtcaactcctagtcaa
tcaagcccatttggtagttcattccagcaaacacaaccagcattcggaagcagtcctttt
ggttccaccacgtttggtgcttcaagtcaacctgcattcggtgctgccagcacaccagct
tttggttcatcaagtacacctgcatttggtgtagcatcaaccccagcctttggtgcctca
agtaccccagcctttggtgcctcaagtacgccagcctttggttctacaagtaccccagca
tttggtgctgcaagtactccagcatttgggtcctcatcaactccattgtttggtagcaca
ggatctgctttcggggtttcaagtactccagcatttggttctacaacatcatcagggttt
ggtgctcctggcacctccttgtttggatcttcaagtacttcagcatttggcgcaactagt
acccccacgtttgggtcttcgagtacccctgcttttggtgcatcaagtgctccttccttc
agttttggttcccaaccgtcttttggtcagtcagcttctacatttgggagcacgccattt
ggagcaacaccatcgccttttggtactcagagttcctcgtttggtactcagacacccaca
cctgcttttggtagtcaaggttttggccaatcaggttttggcagccaacaaggaagtcga
gtagtaccttattctgcaacacaagaggctgatgctggtacacagcctgctgggaagctg
gagtcaatatcggccatgcctgcatacaaagataaaagtcatgaggagttgagatgggaa
gattatcaacgtggtgataaaggtggtcccagtcctagcggacaaccagcaagtgctatt
tcttttcctgctcaagcacaagcaaacccatttggatctacagcgacatttggtcagcct
gctgcaaacccattttcctctactacgtcatcgaaccccttcgcgcctaaaactccatct
tttggttcatctggctttggtgcctcatccccatcaccttttggctcaacatttggttct
tcatcatccagcccttttggatcaacatcttcaacaacttcattatttggagctcctagt
agcactccatttggttctagttcttcaccatccctttttggtggaacgacgacttctgct
tttagttctccgtcactttttggttcgacagctgggtcgacttcaacatttagttctggg
ctgaacttcggcaatactcaatcctcaggactatttcagtccacaactccatctctgggg
caaacaccgtctccttttggacaatcaactggttttcagcagtcaacaccagcttttggt
tcaagtttgttcagtacgccatcatctggatttggcggaggcctttttaacagctcatct
tcagcactttctacaagcactcctatgggttttggtcagacaactccttctctatcaact
cctttccaaccgtctgcacctgctcaaacctttagtaattttgggcagacgcagccagca
ctatcaggtggttttggaggctcctcaagtatctttggtcagggaacattcggtcaatcc
agtgttgcaactcagtctaatgtggtcatgcaacctgctcctgtgacaaatccttttgga
acacttccagcaatgcctcatatgtccattggtcgtgttggttctgcgccttcagttcag
tatgggatttctagcatgcctgtttctgaaaagccagctccagtcagaatttcggccttg
ctgactcctaggcatttgtctcagaggagaattaggcttccagcaagaaaatatcatcct
aaagttgatggtcaaatggtaccattcttcagcgatgatgaatcagcaacagcaacaccc
aaggcagatgctctatttatcccaagggtgaatccaagatcattgattattcgtccaatt
gaacagtggcccttaagacctaatgcgtcgaagctacctcaagactcaccattaaatgga
aatggcaaagtgtcaggagagccaagtgctccagttctagatgaaatgtctcagaaatat
catgatgagagccctaagcaaaatggccacgctgaggaacaaaataatggccatacatca
tcatcaccatccaagactgctgagaaggcaaacggggtttctcaggataaccattctgag
aaggagacggatatgtcatatatcaaaatatccgggcacagggctggtgaagctgccatt
gtctatgagcatggagctggaattgaggctctgatgcccaagctccgccatgctgactac
tacacagagccacggatccaagagcttgccgccaaagagagggcagaacctgggttttgt
cgccgagtgaaggactttgtggtgggaaggcggggcttcggtagcataaagtttttggga
gaaactgatgtgagaaggcttgatctggaggccattgtcctgttcaaccaccgagaagtt
gttgtgtacaaggatgagagcaagaaacctgcagttgggcaggggctgaataaggcagct
gaggtaactcttcttaacatcaaatgcgtgaacaagaagacggggcagcagtacactgag
ggccccaaagttgagaagtacaaagaaatgcttatcaagaaggcagaggagcagggagct
gagtttgtgtcatacgatgcagtgaagggtgaatggaaattcagagtgaagcacttcagc
agctacgagtttggagatggggatgaagatgataaagctgccggggctcctttttcgtaa
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