Asparagus officinalis (garden asparagus): 109834766
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Entry
109834766 CDS
T05243
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109834766
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109834766
03041 Spliceosome [BR:
aof03041
]
109834766
03036 Chromosome and associated proteins [BR:
aof03036
]
109834766
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109834766
Spliceosome [BR:
aof03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109834766
Complex B
109834766
Complex C
U2 SnRNP specific factors
109834766
Chromosome and associated proteins [BR:
aof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109834766
TFTC complex
109834766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
109834766
NCBI-ProteinID:
XP_020258375
LinkDB
All DBs
Position
3:22529004..22553552
Genome browser
AA seq
1363 aa
AA seq
DB search
MVRDGVVIGVVGWGTVLRGSAVLHAVSGHIRSPSTLDIVFGKETSLELVVIGEDGILESV
TEQSVFGIVKDLAILRWNGEYRESTPQTQGKDLLVVISDSGKLSFLTFCSEMHRFFAVTH
VQLSAPGNSRHQLGRMLAVDPAGCFVAVSAYDDRIALLSVSKSARNNIVDEKIVYPPENE
GETNAVKETSRADVRGTIWSMCFIPSEDKRGHNPILAVLMNRKPIGENQIVLFEWNLSTR
SIHVIFRYSEAGPLAHHISAVPHLSGFALLFRIGDVLLIDMRNPHSVSSIYKMNLDLDAA
AEEQSSFEDPCRGLFVDDEGMSNVACALLELRDSGDDDPMNIDSESGRSVSTSKYIVSWS
WEPVGSTSSRLIFCLDTGELHILEICSEVGGVRVLSNCVYKGSPCKTLLWIESGFIACLV
DMGDGMIFKLEDGRLLYRSPIQNIAPILDLAVENFPDEKQNQMYACCGMNPEGSIRIIRN
GISVEKLLKTASTYQGITGTWTLKMKKSDAYHSFLVLSFVEETRILSVGLSFNDVTDAAG
FLPDVSTVACGLVADGLLLQIHKGGVRLCLPTTCGHPEGIPLSAPVCTSWYPGNMSISLG
AVGHTFFIVTTSNPCFLFVLGVKHISAYQYEIYEIQHVKLQHEVSCISIPRESIKHDQLA
LNLNLAQKDHQVALQNAVDNGITFLIGTHKPSVEVLSIVFGVGLSVLAVGTISINNALGT
PVSGSIPENVRLVSVDRPYILAGLRNGMLLRYEWPAASSIPLAEQNRQFDFFNKIDASSS
QMMASFSFVNVKKNAENSKTVILQLIAIRRIGITPVVLVALHDSLDADIIILSDRPWLLH
SARHSLAYTSISFQPATHVTPVFSADCPKGILFVADNSLHLVEMVHAKRLNVQKFSVGGT
PRKVLYHHESKTLLVMRIGLPGVCSSDICRVDPLSGSVLSKFVCEPGETAKCMQIVKVGN
EEVLIVGTSQVSGRIVMASGEAESTKGRLIVLSLESSQRSSDSSSLMFSSSLNLPSHISS
PFGEIVGYATEQLSSSSLCSSPDDISNDVVKLEEMEARQLRLIFQVQLPGAVLSVCPYLD
RYFLASAGNIVNVFGFLNENPQRLRKFATAKTRFAITCLATYFTRIAVGDCRDGILFYSY
REDNRKLEQMYSDPVQRLVADCALVDMDTVVVSDRSGNISVLSCADHLEGSANPEKNLTL
NCSFYLGETIMGIHKGSFSYKLPVDDMPNKCNGAERAFEDSYNSIVAGTLLGSVLVLIPI
TREEYELLEAVQAKLVLHPLTSPLLGNIHKEFRGRGPLAGPTMLDGNLLAQFLELTSMQQ
EDVVTSSSTAQSSRGTIPDSCHGSPISVCEVVRVLERVHYALN
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atggtcagagatggagtcgtgatcggagtagttggatgggggaccgtcctcaggggtagc
gccgtccttcacgccgtctctggccacattcgttctccctccaccctcgacatcgtcttc
ggcaaggaaacctcactagagttggtagtgattggcgaagatggaattttagaatcagtc
actgagcagtctgtattcggcattgtaaaggaccttgccattttaagatggaatggggaa
tatcgtgaatcaacaccccagacacaagggaaggaccttttagttgtgatttcagattct
ggaaagctctcttttcttaccttttgctctgagatgcacaggttctttgctgtgacacat
gttcagttatctgctcctgggaattcaaggcatcaacttgggagaatgttagctgttgat
cctgcaggctgttttgttgctgttagtgcatacgatgatcggattgctctattatctgtg
tccaagtctgccagaaacaatattgttgatgagaaaattgtctacccaccagaaaatgaa
ggagagacaaatgctgtaaaggaaacttcaagagctgatgttcgtggtacaatttggagc
atgtgctttattccaagtgaagataagagaggacataaccctatactggcagttttaatg
aacaggaaacccattggtgagaatcaaatagtattatttgaatggaatctaagcacacga
agtatccatgttatctttcggtattcagaagctggtcctttagcacaccatatttcagca
gttcctcatctttcaggcttcgctttgcttttcagaattggtgatgttcttcttattgat
atgagaaacccccattctgttagttccatttacaaaatgaatcttgatttagatgctgca
gctgaagaacaaagttcttttgaagatccctgcagaggtttgtttgttgatgatgaaggt
atgtccaatgtggcttgtgctttgttggaattgagggattctggggatgacgatcccatg
aacattgatagtgaaagtggaagatcagtttctacgtcaaagtacattgtttcttggagt
tgggaacctgttggatcaactagttcaaggttgattttttgtttggacacaggagaactg
catatacttgaaatttgttctgaagttgggggagtcagagttttgtctaactgtgtctac
aagggttcaccttgtaagacgcttctttggattgaaagtggatttattgcttgtcttgtt
gacatgggagatggcatgatttttaagttggaagatggaaggttgctatacagaagtcca
attcagaatatagcaccaattttggatttagctgtcgagaatttccctgatgagaagcag
aaccaaatgtatgcctgctgtggtatgaatcctgagggatcaataagaataattcgaaat
ggtatcagtgtagagaagcttttaaagactgcctctacttatcaagggataactggtaca
tggacattgaagatgaagaaaagtgatgcttatcattcttttcttgttttgtctttcgtt
gaagaaaccaggatactttctgttggtctgagctttaatgatgtcactgatgctgctggt
tttctgcctgatgtctccactgtggcatgtggcttggtggctgatggattgcttctgcag
attcacaagggtggggtgagactttgtttacccacaacatgcggtcatcctgaaggaatt
ccactctctgcaccagtttgtacttcttggtatcctggtaacatgtccatcagtttgggt
gctgttggacatacttttttcattgtgactacttctaatccttgcttcttatttgttctt
ggtgttaaacatatatcagcatatcagtatgaaatatatgagattcaacatgtgaaactg
cagcatgaagtatcttgcatatctataccaagagaaagtatcaaacatgaccaattagca
ttaaatttaaatctagcacaaaaggatcatcaagttgctctgcagaatgcagttgacaat
ggtattacttttctgattggtacacataaaccatcagtagaggtcctttcgattgtattt
ggagtagggttaagcgtccttgcagttggaactatttcaataaataatgcgctaggtact
cctgtcagtggcagcatccctgaaaacgtgaggcttgtatcagtggaccggccctatatt
cttgctggcttgagaaatggaatgctacttcgttatgaatggcctgcagcctcctcgatt
cctctagcagaacagaacagacaatttgacttttttaacaaaatagatgcttcatcgtca
caaatgatggcttctttctcctttgttaatgtcaagaagaatgctgagaattctaaaaca
gttattctgcaattgatagccatccgtcggattgggataactcctgtagttttggtagcc
ctccatgattcccttgatgcagatataatcattctcagtgacaggccttggttattgcat
tctgcaagacacagtcttgcttatacttctatctcatttcaacctgccactcatgtgacc
cccgtgttttctgctgattgccccaaaggaattttatttgttgccgataatagtttacat
ttggtggagatggttcatgctaagagacttaatgtacagaagttttcggttggaggcact
ccgcggaaggttttataccatcatgaaagtaaaacattgctggtgatgaggataggacta
cctggggtttgctcatcagatatatgtcgtgtagatcccttgagtggctcggtgctctca
aagttcgtgtgcgaacctggggaaacagcaaaatgcatgcaaattgtcaaggttggaaat
gaggaggttttaattgtaggaactagtcaagtatctggacggatagtcatggctagtggt
gaagctgagagcaccaaaggacgtcttattgtgttaagtctggaaagctcacagagatcc
tcagatagcagttcactgatgttcagctctagtttgaatttgccttcccatatatcttct
ccttttggcgaaattgttgggtacgcaactgaacagttatcaagcagtagtctctgcagt
agcccagatgacatcagcaacgatgtggttaaacttgaagaaatggaggcacggcagttg
cggttaatctttcaggttcaactgcctggtgccgtactttctgtctgtccatacttagat
cgttatttcttggcatcagctggcaacatcgtcaatgtatttggttttctaaatgagaac
ccacaacgactgagaaagtttgctacggcaaagacacgctttgctataacgtgtttggct
acgtattttacaagaattgctgttggtgattgtcgggatggcatccttttctactcgtac
cgtgaggataatagaaaattagaacagatgtattctgatccagtacaaagactggttgct
gattgtgcacttgtggatatggacaccgttgtagtatcagatcgcagtgggaacatctcc
gttctttcctgtgcggatcatctagaaggtagtgcaaacccagagaagaatctaacacta
aactgctcattttacttgggagaaactattatgggcattcataagggttcgttctcatac
aaacttccagttgatgatatgccgaacaagtgtaatggtgcagagagagcatttgaagat
tcatacaacagtatcgtggctggtacgctgctcggaagtgtgcttgttctgattcccatt
acgagggaagagtatgaactgttagaagctgtacaagcaaaacttgtgcttcatccattg
acttcccctctgctaggaaacatccataaagagttccgtgggcgtggaccactggcagga
cctaccatgcttgatgggaacttgcttgcccagttcttggagctgacaagtatgcagcaa
gaagacgtggttacatcatcatccaccgcccaaagttctaggggcacaataccagattct
tgccatggttctcctatttctgtctgtgaggttgttcgggtgcttgaaagagttcattac
gcccttaactag
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integrated database retrieval system
