Asparagus officinalis (garden asparagus): 109837187
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Entry
109837187 CDS
T05243
Name
(RefSeq) general transcription factor IIH subunit 2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03022
Basal transcription factors
aof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109837187
09124 Replication and repair
03420 Nucleotide excision repair
109837187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109837187
03400 DNA repair and recombination proteins [BR:
aof03400
]
109837187
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109837187
DNA repair and recombination proteins [BR:
aof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109837187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
IBR
VWA_2
zinc_ribbon_9
VWA
Motif
Other DBs
NCBI-GeneID:
109837187
NCBI-ProteinID:
XP_020260909
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All DBs
Position
4:36309701..36323829
Genome browser
AA seq
310 aa
AA seq
DB search
MAVVAKGAEIFIREFFDQNPLSHIGLVTIKDGVSQCLTELGGSPDSQIKALMGKLECSGD
ASLQNSLELVHEYLSRIPSYGHREVLVLYSALNTCDPGDIMETVKKCKKDKIRCSVVGLA
AEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPAIAEYAAANLIKMGFPQRGAEG
AISICSCHKEAKVGGGYTCPRCKARVCELPTECRLCGLTLVSSPHLARSYHHLFPVTPFN
EVPQVLLNRMHQKPKTCYGCQQSIGSTGTKTSLHVSCPKCKQHFCLDCDIYIHESLHNCP
GCESQRGLPT
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgttgcaaaaggtgctgagatattcattagggagttctttgatcaaaatcca
ctcagtcatattggtctcgtgaccataaaagatggtgtttcccagtgcttaacagaactt
ggtggcagtccagattcacagattaaagctttgatgggtaagcttgaatgctcaggagat
gcgtccttgcaaaattccctagagcttgtccatgaatatctaagccgaattccatcttat
ggccatcgagaggtcttagtcctgtattctgctctaaatacctgtgatcctggtgacata
atggagacagtaaagaaatgcaaaaaagacaagataaggtgctccgttgttggtcttgct
gctgaaatattcatatgcaaacatctatgtgaagagacaggggggtcttatactgtggca
ttagatgagtcccattttaaggaattattattggagcatgcaccacctccacctgcaatt
gcagaatatgcagctgctaacttaatcaagatgggattcccacaaagaggtgctgagggc
gcgatatctatttgttcatgtcataaggaagcaaaagttggtggaggctacacatgccca
cgatgtaaggcacgagtttgtgaactaccaacagagtgtcgactctgcgggcttacactt
gtttcttctcctcatttggcacgatcatatcatcatctcttccctgtaacaccattcaat
gaggtgcctcaggtgcttttaaatagaatgcaccagaagccaaaaacttgttatggttgc
caacagagcatagggagcacaggaaccaaaaccagccttcatgtatcttgccccaaatgt
aagcaacatttctgccttgactgtgatatctacatccatgaaagcttgcataattgccct
ggttgtgagagccaacgaggattgcctacatag
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