Asparagus officinalis (garden asparagus): 109843431
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Entry
109843431 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03013
Nucleocytoplasmic transport
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109843431
03015 mRNA surveillance pathway
109843431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aof03019
]
109843431
03041 Spliceosome [BR:
aof03041
]
109843431
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109843431
Spliceosome [BR:
aof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
109843431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
109843431
NCBI-ProteinID:
XP_020267954
LinkDB
All DBs
Position
5:complement(5862830..5871436)
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AA seq
855 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFPPELDHLVDMTKVKMDVIRPWIATRVTELL
GFEDEVLINFVYGLLEAKEVDGKKIQIQLTGFMEKNTGKFMKELWGLLLSAQNNVSGVPQ
QFLDAKEEETKKKKAETDRIAQEIQKRRDRDGREPERERKSRFDGEADGSKFTKFSGPRD
SDGQPEADREVDGRHASRAKNGHSRSSPSNDHSPSPRIVPSPTRSTNKSISGSRSYSEER
RKSRSLSVSSQSLRRSVSPKRRYQSPERQSLSPTRRYRPSLRRSISPHRRQSPKRIRSPV
RRRSPHPRWRSHSRHRSPSPYRYRSPRARRRSPRRISRSPLRRRSPSPLWRRSPSPFRRR
SPARRRSSPRHRSPSPSRHRSPLKARRRSPSPVRCRSPIKNRSLSPERVRSPSPGRRSPP
SRSPRRRQGSPFRSPKNHPADSPTSPPQRKRSPSPYRSRSPSRRSRRSLSREHDGRTNGI
KSRRYQEEQFSGRTAAKDSPGNHSSERVLSERPGSKYKPSSHRVPISLRSPQRDVGNQSG
SGKKMSVLSPENSPTDMQKLNPRAHRRSPSLSKSPVRQTNIKVPQHDSPRKSKEHITRAR
EVSRHRTDSSRRSKDSPRELSPESSSPDRREFSRSPASPGSPPHSELKKKDSRRESDRQL
PVKLRKSDLPSDKTECEQVVGDEMRDRQGGDENNELYHETGSNTRSKRKMDKKIRDVRDS
DSEDTSSYKNENPEKRKHKKSDKRKRDYDETSGSDSQIEGKKKSKRRRKDEKRLRKEXXX
XRSGKMKVKSVSTVSPPSDVEMNRDDSGDSDPGASRPKNLHLSDADENESEQKKLEIELR
EKALESLRAKKAISH
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtggtttcttcaggggcacgtcggcggatcaggacactcggttctcgaacaag
caggcgaagctcctcaaatcgcagaagttcccgccggagctcgatcatctggtggatatg
acgaaggtgaagatggatgtgatcaggccgtggatcgcgacgagggtgactgagctcctt
ggatttgaagatgaagtcctgattaatttcgtttatggtcttctagaggcaaaggaagtg
gatgggaagaagattcagatacagcttactgggttcatggagaagaatacggggaagttc
atgaaggagctctggggtttgcttctcagcgcgcagaataatgtcagcggagttcctcaa
cagttcttggatgctaaagaggaggaaacaaagaagaaaaaggcggaaacagatagaatt
gctcaggaaattcagaagaggagagatagggatggaagggagcctgaacgagagagaaag
agcagatttgatggtgaagctgatggctcaaagttcacgaagttttctggaccaagggat
tctgatggacaacctgaagcagatagagaagtcgacgggaggcatgcttcaagagcaaag
aatgggcactcaagatcttcaccttcaaatgatcattccccatctcctcggattgtacca
tcaccaactaggtcaaccaacaagtccatttctggatccaggagctattcagaggaaaga
cgcaaatcgaggagtttgtctgtttcatcgcaatcattaaggcgttctgtttctcctaaa
cgacgttatcaatctccagaaagacaatcactttctcctacaaggcgttataggccttct
cttaggcgctcaatttctcctcatcgcaggcagtcacctaaacgaattcgatctcctgtg
agacgaagatctccacatccaaggtggaggtcacattcacgtcatagatctccctctccc
tatagatacaggtctcctcgtgcacgaagaagatctccacgacgcatatctcgttctcca
ttgcgtcgtagatctccttcccctttatggcggagatccccttctccatttcgccgaaga
tctccggcccgccgacgatcttcaccgcgacacaggtctccatcaccatcacgtcacaga
tctccacttaaagcccggcggagatcaccttctcctgtgcgatgcaggtctcctatcaag
aacaggtctttgtctccggaaagggtcaggtctccatctccaggaaggagatcaccaccc
tcaaggtctccaagacgccgacagggatctcctttccgctcacctaaaaatcaccctgca
gattctccaacctctcccccacaaaggaaaaggagtcctagtccatataggagtcggagt
ccatcccgccgaagtcgtagaagcctgagtagggaacatgatggccgcacaaatggtatt
aagtccagacggtaccaagaggagcaattttctggaaggactgcagcaaaggattcacct
ggtaaccattcttcagaaagagtgctgtctgaacgccctggctccaagtacaagccttca
tcacacagagtaccgatttctttacgatctccccagcgtgatgtgggaaatcagagtggg
agtggtaagaaaatgtctgttctatcaccagaaaactctccaactgacatgcagaaatta
aatccaagggcccatagaaggtcccccagtttgtcaaagagtcctgttaggcaaacaaat
attaaggtgcctcaacatgacagcccaagaaaaagcaaagaacatattactcgtgccagg
gaggtttcacgtcatagaactgattcctcacgtaggagcaaagattcacccagagaattg
agtccagaatcatcctctcctgatagaagagagttcagtcggtctcctgcttcccctggt
agtccaccacattcagagttaaaaaagaaggatagtagacgggaaagtgatcggcaacta
cctgttaagctgcgtaagagcgatttgccttcagataaaacagaatgtgaacaagtagtt
ggtgatgagatgagagatcggcaaggaggtgatgaaaataatgaattatatcatgaaacg
ggatctaatacaagatccaagagaaagatggataaaaaaatacgggacgtcagagattca
gactctgaagacactagttcatacaaaaatgagaatcctgaaaagagaaagcacaagaag
tctgataaacgtaaaagagactatgatgaaacttctgggtctgattcccaaattgagggg
aaaaagaagtcaaagagaagaaggaaagatgagaaaaggctgaggaaggagnnnnnnnnn
nnncgatctggcaagatgaaagtgaaatcggtatcaaccgtttctcctccttcagatgtc
gagatgaatcgtgatgattctggtgactctgaccctggtgctagcagaccgaagaatctt
catttgagtgatgcggatgaaaatgagtcagaacagaaaaagcttgagattgagctgcga
gaaaaagcccttgaatctctcagagcgaagaaggctatcagtcactaa
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