Asparagus officinalis (garden asparagus): 109844760
Help
Entry
109844760 CDS
T05243
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC109844760
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aof
Asparagus officinalis (garden asparagus)
Pathway
aof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109844760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aof03021
]
109844760
03019 Messenger RNA biogenesis [BR:
aof03019
]
109844760
Transcription machinery [BR:
aof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109844760
Messenger RNA biogenesis [BR:
aof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109844760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PMD
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
109844760
NCBI-ProteinID:
XP_020269462
LinkDB
All DBs
Position
6:complement(3478238..3490412)
Genome browser
AA seq
1407 aa
AA seq
DB search
MGVDGDAVTGSGDFNWTDKCEVLLGQVPHMRGGRIKLEWLRNNFMNVPIDATEEIVKMYA
RAYILHMIGTILFPDSTKDSVHVRWLPLLEDLVDCGGLSWGSAVLAYLYREMTKVALVQN
KEFKGCLTLLQIWSWERLHLGCPDLREARALDGNIPLGCRWNVSRSWHTSPKGHENFYRN
ELDQMEDEHVKWMPYEQVLESLPDICTEEPDVWRARVPIICFEIVEMHVPDRVLRQFGLR
QHIPVPVEVIERNPRKGAHRQDWEHIHSAYIGRWDNREEQLVMERVDAPDLGVYLRWYWG
ITRRWIFQENKAPKEYIPRGPVERELVQELEELSTMAHDAIRTTTEPGPRNTFLRMIKKI
RSALQRTRNARRDEREERDQLSTIVVDSEDTGAGSSGAHDEAGAHNRLKPDVHTPSRENP
RPPTSGLILDRFKALVRDGEEVVQAYEELLSELTFNSKPIITELTIIAGEQREFGEGIAD
AIFGRILEVPVDQKLPSLYLLDSIVKNIGREYVRYFATQLPKVFCEAYNQVHSNMHPAMR
HLFGTWSQVFPSSVLRKIENKLQFSTNESQRSVGQTNIRNSESPSPRPSHGIHVNPKYLE
AQRQLQHSASVGVMTLKRMCVQLILKLIELEVLLQKALKDGLELLQNFMKLYVRGNSSSL
HSYGRDDYDFNNPEMLSVHLVRSKAGSLKSAALRTSKMYDDHINAKVPKTLSPSRVMSRR
SASPNDDRLSRDGSPWAAAERATQPHSRLGFGPGRAVDQNGRLEGRWLANVGAPQLEASA
TYDPNAGYIKKHPRELINAYGNPSGKDTSLENISKIQRSNVNGISREVATKNWRSFEEDE
YVWEDMSPTLLANHRRNNLPQLGPSSGSLNRRIGLSRPDVSILEPDFRANNWCDQTTQNP
VDDPAIVVNDRIPVLRSGHGSMPMKSSDSREAQNEQFRPYHSSSYVHEPGKFPYSFQHAS
GELSSKSRGWEPRIPLPIDRIAADNGQKLPIPYDSPPEVEVPHQKLSNVHSSSLNTEASM
LEKRLELRPFSPPTAPVLWPPVHKSQPLPLFPVPPYQKQFENTSSLMESSKPINQGLNPA
IFVPHQFESSDRRTAEPSRVFTLPHQQSGLMHTNHQRDQGNDMRNQSQEVRGGYIPSASV
HLSSHLMAPSLNHMQIQGHGVPISSLPNKISPMDSSGGMPNMPGSSSLVQGGIVPPLPPG
PPPGSSHVGPQSQSTGSIMSASPAIAGLFSTLMAQGLISLTPPAQTQGTVGLEFNAELLK
VRHESAINALYTNLPRQCTTCGLRFKCQEEHSTHMDWHVTKNRISRNRKQKPSRKWFVNT
KEWLSGAETVGTDVVPFMPIETVAEKKEDKXLCGEPFEDFYSDEAEEWMYKGTVYMNFPD
GKIDGLDRSQLGPIVHAKCRSESNEGS
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgggagtggatggagatgctgtcacaggtagcggcgacttcaactggacagataagtgt
gaagtattgttgggtcaagttcctcacatgaggggtggaaggatcaaacttgaatggttg
agaaacaattttatgaatgttccgatcgatgcgaccgaggagatcgtcaagatgtatgcc
cgtgcatacatacttcacatgatcggtactattctattcccggattccacgaaggattcg
gtgcacgtgaggtggttgccactcctggaggatcttgtggattgtgggggattgtcatgg
gggagtgccgtgttagcgtatctgtatagggagatgaccaaagtggctcttgttcaaaac
aaagaattcaagggttgtctcactctgctacagatatggtcttgggagagattgcatttg
ggttgcccagatttgagagaggcacgtgctctcgatggcaatattccgttaggctgcaga
tggaatgtatctagatcatggcatacctcaccaaagggccatgaaaacttctataggaac
gaactcgatcaaatggaggacgaacatgtcaagtggatgccatatgaacaagttttagag
tcactaccagatatatgcacagaagagccggatgtgtggcgtgctcgcgtcccgatcata
tgttttgagattgtcgagatgcacgtgcccgaccgtgtgctacgacaatttgggctacga
caacatatcccggtccctgtggaggtaatagagagaaatcccagaaaaggtgcacatcgt
caagattgggaacatattcacagtgcttacatcgggaggtgggataacagggaagaacag
ttggtgatggagagggttgacgcacctgacctaggtgtgtatttgcggtggtattggggg
attactcgccggtggatatttcaggagaacaaagctcctaaggaatacataccaagaggc
ccagttgagagagagttggtacaagagctcgaagaactttctactatggcgcatgatgca
atccgaacaactaccgagccagggccgaggaacacgttccttcgcatgatcaaaaagatt
cggtccgctcttcaaaggacgcgtaatgcaagacgagatgaacgtgaggagcgagaccaa
ttgagtacgatcgtcgtcgattccgaggacacaggggcaggctcaagcggtgcacatgat
gaagctggggctcacaacaggctcaagccggatgttcacacgccgtcccgagaaaaccct
aggcctccaacctccggcctcattctcgatcggttcaaggctttggttagggacggcgaa
gaggtcgttcaagcgtacgaggagctgctttcggagttgacgtttaattcgaagccgatt
ataacggagctcacgattattgcaggggagcagagggagtttggggaggggatcgctgat
gctatttttgggaggattcttgaggtgccagtagatcagaaactgccttcactgtacctt
ttggatagtatagtgaagaacattggtcgtgaatatgtgaggtattttgcaactcagctt
cccaaggtgttctgtgaggcatacaatcaagtccattctaacatgcatccagcaatgcgg
cacctatttgggacatggtctcaagtcttcccctcttcagtgcttcgcaagattgaaaac
aagctgcaattttctacaaatgaaagccagagatcagttggccaaacaaatataagaaat
tctgaatctccatctcctcgaccttctcatggtattcatgtcaatccaaaatacttggag
gcacaacggcaacttcaacattctgctagcgttggtgtaatgacactcaaaagaatgtgt
gtgcagctgattttgaagttgatagagttggaggtcttgctgcagaaagccctaaaggat
ggtctggagcttcttcaaaatttcatgaagctctacgtgcgtggtaattcttcaagctta
catagctacggtcgtgatgattatgatttcaataacccagaaatgctatctgtacatctt
gtgaggtcaaaagcaggctcactgaaatccgcagctttgcgtacatcaaaaatgtatgac
gatcatataaatgccaaggtcccaaagactttatctccttctagagtaatgtcgagaagg
tcagcatcaccaaatgatgacaggctctcaagggatgggtctccttgggctgctgctgaa
agggcaactcaacctcattccaggcttgggtttggacctggcagagcagttgatcaaaat
ggccggttagaaggaaggtggctagccaatgttggtgcccctcaactggaagcttcagca
acatatgaccctaatgctggatacatcaagaagcacccaagagaattaattaatgcttat
ggtaatcccagcggaaaagacacttcccttgagaatatctctaagatacagcgaagcaat
gtaaatggaattagtagggaggttgcaactaaaaattggcgaagtttcgaggaagacgag
tatgtctgggaggatatgagtccgacattattagctaatcacagaaggaacaacttaccg
caattgggacctagctctggaagcctaaaccgaagaattggtttaagtagacctgacgtc
agtattcttgaacctgattttagagcaaacaattggtgtgaccaaactacgcagaatcct
gttgatgacccagccatagttgtcaatgatagaattcctgttctaagatctggtcatgga
tccatgcctatgaaatcttcagacagtagagaagctcaaaacgaacaatttcgcccctat
cacagttcttcctatgttcacgaacctgggaaatttccatacagttttcagcatgcttca
ggagaacttagctcaaagtcacggggatgggaacctcgaatccctctccctatagatcgt
attgcagcagacaatggtcagaaactgcctattccttatgatagtcctccagaggttgaa
gtgccacatcagaagttatcaaatgttcactccagctcattgaatacagaggcatcaatg
ctagaaaaacgcttggagttgaggccattctcaccccctactgcccctgttctatggcct
cctgttcataaatctcagccactgcccttgtttcctgttcctccttatcaaaaacagttt
gaaaatacatccagtcttatggaatctagtaagccaattaaccaaggacttaaccccgct
atatttgtacctcaccaatttgagtcttctgataggagaactgcagaaccaagcagggtg
tttaccttgcctcatcaacagtctggattaatgcatacgaatcatcaaagagatcagggt
aatgacatgagaaatcagtctcaggaggttcgtggaggatatattccatctgcatcagtt
catctttcctctcatttaatggctccgtccctaaatcacatgcaaattcaggggcatgga
gttcccataagttctttgcctaataaaatatctccaatggatagttctggaggaatgccc
aatatgcctggttcctcttcacttgtacaaggtggaattgtaccacccctaccgccaggt
ccacctccgggatcatcccatgtgggtccacaatctcaaagtactggctctataatgtct
gcctctcctgcgattgctggcctgtttagtactctaatggctcaaggtttaatctcattg
acgcctccagctcaaacgcagggcacagtggggcttgaattcaacgcagagcttcttaag
gtgcgacacgagtctgcaataaacgctttatatacaaatcttccaagacaatgcactaca
tgtggtctccgtttcaagtgccaagaagagcatagcactcacatggattggcatgtaact
aagaatcgaatatctagaaaccgcaaacaaaagccttctcgcaaatggtttgttaatacg
aaggagtggctgagtggtgctgagactgttggaactgatgttgtaccttttatgccaatt
gaaacagtcgcagagaagaaggaagacaaancgctatgtggtgagccctttgaggatttt
tatagtgatgaagctgaagagtggatgtacaaagggacagtgtacatgaactttccagac
ggaaaaatcgatggtttagatagatctcagttgggccccattgtgcatgcaaaatgcaga
tccgagtcaaatgaaggttcttga
DBGET
integrated database retrieval system
