Antiquaquibacter oligotrophicus: LH407_01905
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Entry
LH407_01905 CDS
T09620
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LH407_01905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_01905
Enzymes [BR:
aog01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LH407_01905
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LH407_01905
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UDF13631
LinkDB
All DBs
Position
379642..382119
Genome browser
AA seq
825 aa
AA seq
DB search
MAVNSGGNDQVVTIDGHRLKLTSLDKVLYPETGTTKADVLDYYARVAEPLIRHAANRPVT
RKRWVNGVGTADDPGQMFFQKNLDDRSTPQWVLRRDIQHSDHVNSYPLVNDRATLIWLGQ
IAALELHVPQWQFGRTGKPKNPDRLVLDLDPGPGAGLPECAEVARLARVILTGMGLDPMP
VTSGSKGIHLYSAIDGRQTSDQVSAVAHELARALEADHPDLIVSDMKKALRSGKVLVDWS
QNNGSKTTITPYSLRGRLQPMVAAPRTWDELDDPDLAHLDYREVIERVEKRGDLLEALTA
GHLASLEPTPERMAGFIQAGGPDDRLATYRAMRDGEKTPEPVPSEAPPPSDGNSFVIQEH
HARRLHYDFRLEHDGVLVSWAIPKGVPTDPGQNHLAVQTEDHPLAYGAFEGTIPAGQYGA
GEVTIWDKGAYDLEKWRDGKEVIATLHGERHGSHRYALIHTGGRGGDDNNWLIHLMKPAD
EQPPRTSKADSRRRVIGGTRSLRSTSEKRIAPMLASPGALGELGDSTAWAFEMKWDGIRA
IAEIEGGTLRLVSRNGVDITVTYPELDGLPRMLPADAVLDGEIIALNKAGRPDFGVLQTR
MKLTKKKYVDEARATTPVQFMVFDLLEYDGERLLERTYDERRSMLEEVLAAEHPVEVPPA
FDGDAKAAFAASRELGLEGIVAKRRASGYLPGKRASSWIKLRHNLSQEVVIGGWRPGSGA
RSHRIGSLLMGVPTDEGLRYVGRVGSGLTDRQLDELASRLRRMSRSTSPFVGLPPADASD
AHFVTPRLVGEVTFSEWTPTGKLRHPSWRGWRPDKSPEDVRRESN
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgaactcgggcggaaacgaccaggtcgtcaccatcgatggtcaccggctgaag
ctcacgagtctcgacaaggtcctgtacccggaaacgggcacaacgaaggccgacgtgctc
gattactacgcgagagtcgccgaacccctcatcaggcatgccgccaatcgtcccgtgacg
cgaaaacgatgggtcaacggcgtcggaacggcggatgacccggggcagatgttcttccag
aagaacctcgatgatcggtctacaccgcagtgggtgctacgacgcgacatccagcactcc
gatcacgtcaactcctatccactcgtcaacgaccgtgcgaccctcatctggctcggccag
atcgcggccctcgaattgcacgttccccagtggcagttcggccgcacgggaaaacccaag
aatcccgatcgtctcgtgctcgacctcgacccgggtcctggagcaggcctgccggaatgc
gccgaggtcgcgcggctggccagggtgattctcacgggaatggggctcgaccccatgccc
gtcacgagcgggtcgaagggaatccacctctattccgccatcgacgggcgtcagacgagc
gaccaagtgtccgcggtggctcacgaactcgcgcgcgccctcgaggcggatcatcctgac
ctcatcgtgagcgacatgaagaaggcgctgcgctcgggcaaggtgctcgtcgactggagc
cagaacaacggcagcaaaaccaccatcacgccctattccctccgcggtcgactccagccg
atggtcgccgccccgcggacctgggatgagctcgacgatcccgacctcgcccacctcgac
tatcgcgaggtcatcgagcgcgtcgaaaagcgcggcgacctcctcgaggcgctcaccgct
gggcacctcgcgtcgctcgagccgacccccgagcggatggccggtttcatccaggcgggc
ggacccgatgacaggctcgccacgtaccgcgcgatgcgcgacggtgagaaaacaccggaa
cccgtgccgagcgaggcgcccccgccatccgacgggaattcgtttgtcatccaggaacac
cacgcgaggcgcctccactacgacttccgactcgaacacgacggcgtgctcgtgagctgg
gcgatcccgaaaggggtaccgaccgaccccggccagaatcacctcgccgtgcagaccgaa
gaccacccgctcgcgtacggggcgttcgagggcacgattcccgcgggccaatacggcgca
ggtgaggtcaccatttgggacaagggcgcctacgacctcgagaaatggcgagacggcaaa
gaggtcatcgccacccttcacggcgagcgccacggctcgcatcgctacgcactcatccac
acgggtggccgaggtggagacgacaacaactggctcatccaccttatgaagcctgccgac
gagcagcccccgcgaacgagcaaggccgactcgcgccgtcgtgtcatcggaggaacgaga
tcgctgcgttccacgtcggagaaaaggatcgcccccatgctggcgagccccggcgcactg
ggcgaactcggtgacagcacggcctgggccttcgaaatgaaatgggacggcattcgagcg
atcgccgagatcgagggtggcaccctacgactcgtgagccgcaacggcgtcgacatcacg
gtgacctacccggaactggacggactgccccggatgttgccagccgacgccgtgctcgat
ggcgagatcatcgccctcaacaaggcgggccgaccggacttcggtgtgctgcagacccgc
atgaagctcaccaaaaagaagtacgtcgatgaggcgcgcgccaccacgcccgtccagttc
atggtgttcgatctgctcgagtacgacggggagcgcttgctggagcgaacctacgatgag
cggcgttcgatgctcgaggaggtgctcgccgccgagcatcccgtcgaagtccccccggca
ttcgacggtgacgccaaggcggccttcgctgcgagccgggaacttgggctcgagggaatc
gtcgcgaagcggcgcgcgagcgggtatctccccggcaagcgggcatcgtcgtggatcaag
ctgcgccacaatctctcgcaagaggttgtcatcggcggatggcgaccggggtcgggggcg
cggtcgcaccgcatcggctccctgctcatgggagtgcccaccgacgagggtcttcgctac
gttgggcgcgtcgggtcagggctgaccgaccggcaactcgacgagctagcgtcgcggttg
cgacggatgtcgcgctcgaccagtcccttcgtcggtctcccgccagcggacgcctcggac
gcgcactttgtcacccctcgtctcgtgggtgaggtgaccttctcggagtggacgccgaca
ggcaagctgcggcacccgtcctggcgggggtggcgcccggacaaatcacctgaggacgta
cgcagggagtcgaactag
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