Antiquaquibacter oligotrophicus: LH407_03640
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Entry
LH407_03640 CDS
T09620
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aog
Antiquaquibacter oligotrophicus
Pathway
aog03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LH407_03640 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aog03400
]
LH407_03640 (mfd)
Enzymes [BR:
aog01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH407_03640 (mfd)
DNA repair and recombination proteins [BR:
aog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LH407_03640 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
TP_methylase
RecG_dom3_C
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
UDF13959
LinkDB
All DBs
Position
complement(731320..734859)
Genome browser
AA seq
1179 aa
AA seq
DB search
MTLDGIITGLSRARTVESALRVADRSADFSLVDGMRAPLLATLLRASDTPRAVLAITATG
RESEALRRSLASYLPDARIIEFPAWETLPHERLSPSAETVGKRIRALREVGAWQEHPSGH
LILVASVRAALQPLADNLASVEPVELSAGGRGYDLPALSDRLVGLAYSRVDMVTRRGEFA
VRGGILDVFAPTDEHPLRLEFFGDELEQIRAFSVADQRSLPEEITAAELAPSREMLLSDS
VRQRAREMQHEFPSLSTMLAKIGEGIPVDGMESLAPALVDRLVPLTHYLPTDAAIAVIAP
ERVSGRAASLVETNREFLAAAWNAATAGAEAPIDLEAGEFVTLASLRESAGDRTWWTLSP
FDSNSDDDDYVRIDATAVPSFAGQPDGALEHVESLLRDGWRVAVVAEGHGLVERAASVLA
ERELSAREEPFPENAEPGVAYLSMATLDQGFELAEEKLAVLSEAEFFGRAAGYGTRQVKK
LASRRRNVVDPLQLKPGDYVVHNTHGIGKFVELVQREVSTGGRNAIKTQREFLVLEYAPN
KRGYPGDKLFVPTDQLDLLSRYVGGEAPSLSKMGGSDWAAAKGKARKAVRDIAVELVKLY
SARMASKGHSFPPDTPWQRELEEAFPFAETPDQLQTIDEVKADMERPIPMDRLLSGDVGY
GKTEVAVRAAFKAVQDGKQVAMIVPTTLLVRQHLETFAERFAGFPVHLRALSRFQTDKEA
KETIAGLADGTVDVVIGTHRLLSQGVTFKDLGLVIIDEEQRFGVEHKDALKKLKTNVDIL
AMTATPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPYSEKQVAAAIRRELLREGQV
FYVHNRVSSINRIAAQLAELVPEARVAVAHGQMSESALEQVMVDFWERKFDVLVATTIIE
TGLDIANANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDPDKPLSETAHERLNT
IAANNELGAGMQIALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMIGEAVSAFRGDVAE
GQTELRLELPVDASIPEEYIESERLRLEAYQKLSTASAPTASDDSIDRVLEELADRYGEP
PVQVVNLIAVSRLRRMAQKAGLGEVVVMGDKLRVAPANLPDSLQIRLQRMYPGAKYHAAA
SAAIIPLPTVPDDAHLIEWVGDLLVSIFSAEQVAAGEQS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgactctcgacggaattatcacggggctttcgcgcgcccgcacggtcgagagcgcgctt
cgggtcgccgatcgtagcgctgacttctcgctcgtcgacgggatgcgggcacctctgctc
gcgacgttgttgcgggcatccgacacccctcgtgccgttctcgcgatcaccgcgaccggc
agggaatcggaggcgctgcgccgctccctcgccagctacctgcccgacgcgcgcatcatc
gagttccccgcgtgggaaacgctgccgcacgagaggttgagccccagcgccgagacggtc
ggcaagcgcatccgcgcactccgtgaggttggggcctggcaggagcatccgagcggccac
ctcatactcgtagcctcggtgcgagccgccctccagccgctcgccgacaacctcgcgagc
gtcgagccggtcgaactgtccgccggcggccgcggctacgacctcccagcactctcggat
cgacttgtcggtctcgcctactcccgtgtggacatggtgacgcgtcgcggcgaattcgct
gtgcgcgggggcatcctcgacgtgttcgctcccaccgacgagcatccgcttcgcctcgag
ttcttcggcgacgaactcgagcagatccgagcgttctcggtcgccgatcagcgttcgctc
cccgaggagatcaccgccgccgaactcgcccccagccgcgagatgctcctgagcgactcc
gtgcgtcagcgcgcgagggagatgcagcacgagttcccgagcctgtcgaccatgctcgcc
aagatcggtgagggtatccccgtcgacggtatggaatcgctcgcccccgctctcgtggac
cgcctcgttcccctcacgcattacctgccgacggatgccgcgatcgccgtcatcgcaccc
gagcgggtgtcggggcgcgctgcgagcctcgtcgagacgaaccgcgaattcctcgccgct
gcgtggaacgccgccaccgccggtgccgaagcacccatcgacctcgaggcgggtgagttc
gtcaccctcgcgagcctccgcgagtccgctggcgatcgcacgtggtggaccctttcccca
ttcgacagcaacagcgatgacgacgactacgtgcggattgatgccaccgccgttccgagt
tttgccggtcaaccggatggcgcgctcgaacacgtcgagtcacttctgcgcgatgggtgg
cgggtcgccgtcgtcgcggagggtcacgggttggtggagcgggcggcatccgtgctcgcc
gagcgtgagctttcggcgcgcgaggagccgttccccgagaacgctgagccgggtgttgcc
tacctgtcgatggcgaccctcgatcagggcttcgaactcgcggaggagaagctcgccgtc
ctgagtgaggcggagttcttcggtcgcgcggcaggctacggcacacgccaggtcaagaag
ctcgcgagccgccgtcgcaacgtcgtcgacccgctgcagttgaagcccggcgactacgtc
gtgcacaacacacacggcatcggaaagttcgtcgaactcgtgcaacgcgaggtaagcacg
ggcgggcgcaacgcgatcaaaacgcagcgcgagtttttggtgctcgagtatgcgcccaac
aaacgtggttacccgggggacaagctctttgtccccaccgatcagctggacctgctgtcg
cgttacgtcggcggcgaggcgccgagcctcagcaagatgggcggcagcgactgggcggcc
gccaagggcaaggcgcgcaaggctgtgcgcgatatcgccgtcgaactcgtcaagctctac
agcgcccgtatggccagcaagggccactctttcccgccggacaccccgtggcagcgcgaa
ctggaggaggcgttcccgttcgccgaaacccccgatcagcttcagacgatcgacgaggtg
aaggccgatatggagcggcccatcccgatggaccgtctgctgtcgggtgacgtcgggtac
ggaaaaaccgaggtcgccgtgcgagccgcattcaaggccgtgcaggacggcaagcaggtc
gccatgatcgtcccgacgaccctcctcgtgaggcagcacctggagacgttcgccgagcgg
tttgcgggcttccccgtgcacctgcgcgccctctcgcggttccagaccgacaaggaagcc
aaggagacgatcgcgggtctcgcggatggcacggtcgatgtcgtcatcggaacccatcgc
cttctcagccagggtgtgaccttcaaggatctcgggctcgtcatcatcgacgaggagcag
cgcttcggcgtcgagcacaaggacgccctcaagaaactcaagaccaacgtcgacatcctg
gcgatgacggcgacaccgattccccgcaccctcgagatggcggtgacgggcatccgtgag
atgtcgactctcgctaccccgccggaggaccgtcacccgatcctgtcgtttgtcgggccg
tactcggagaagcaggtggccgccgcgatccgccgcgagctactgcgcgaggggcaggtc
ttctacgtgcacaaccgtgtcagctcgatcaaccgcatcgcggcccagctcgccgaactc
gtgcccgaggcgcgtgtcgcggtggctcacggccagatgtcggagagcgccctcgagcag
gtgatggtcgacttctgggagcgcaagttcgatgtgctcgtggcgacgaccatcatcgag
accggtctcgacattgccaacgccaacacgctcatcatcgatcgcgccgacaagtacggg
ctgtctcagctgcaccagttgcgcggacgagtcggtcgcggtcgcgagcgcgcgtacgcc
tacttcctttacgacccggacaagcccctgagcgagaccgcacacgagcgactcaacacg
atcgccgcgaacaacgagctcggtgccggcatgcagatcgcgctcaaggacctcgagatc
cgcggtgcgggaaacctgctcggtggcgagcagtccgggcacatcgccggggtcggattc
gatctgtatttgcggatgatcggcgaagcggtctcggcgttccgaggagacgttgccgag
gggcagaccgagttgcgcctcgaacttccggtggatgcctcgatccctgaggagtacatc
gagtccgagcgactgcggctcgaggcgtaccagaagctttcgacggcttcagcgcccacg
gcatccgacgattcgatcgaccgtgtgctggaggaactcgccgatcgttacggcgaacct
cccgtgcaggtggtcaatctcatcgccgtctcgcgcttgcggcggatggcccagaaggcg
ggcctcggcgaggtcgtggtcatgggcgacaagcttcgagttgcccccgcgaaccttccg
gattccctgcagattcggttgcagcggatgtatccgggcgcgaagtatcacgcggcagcg
tcggctgcgatcatcccgctcccgacggtgccggacgacgcgcacctgatcgagtgggtg
ggcgacctgctcgtgtcgatcttctcggccgagcaggtcgctgcgggggagcagtcgtag
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