Amycolatopsis keratiniphila: AORI_4514
Help
Entry
AORI_4514 CDS
T02678
Symbol
lig
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aoi
Amycolatopsis keratiniphila
Pathway
aoi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aoi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AORI_4514 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aoi03400
]
AORI_4514 (lig)
Enzymes [BR:
aoi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AORI_4514 (lig)
DNA repair and recombination proteins [BR:
aoi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AORI_4514 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AGM07098
UniProt:
R4T958
LinkDB
All DBs
Position
complement(4940097..4942163)
Genome browser
AA seq
688 aa
AA seq
DB search
MARKAVPGQAESGVPGWVSPMLASPDGGRLREGPEWAYEYKLDGFRACMRVAADGSTVLT
SRNDVDFTDEFADLTGVLTEALDGRSAVLDGEIVVYNDAGQIDFGLLQERRGRYQTHRSS
ARRGEPFDDVPVRFLAFDLLQLGGTSLLREPYDERRRQLTALPMPDPYRVEVVRGFTFTD
LAADRRTPRHLLDHVKASGHEGLVAKLRTAAYTPGRRSNAWLKHPLTQTTEVIVCGYRPG
QGRLDGLMGGLLLGAHDPDSGDLLYIGDVGTGFTEAERARLQARLDVLERKRHPFAETPP
RADTARAQWVEPELVGEVVFRQFTRGAGRLRHTAWRGLRDDKKPADVLAPQRREPASTGA
RAKTPARKTTREQTQGEPVAEDQPTASPGAKITVQAGDRRLVLSNLDKPLYPDGFTKGEV
INYYSRIAPVLLPHLAGRPVTFIRFPDGVGGEQFFEKNVPHGAPAWLPTVRIARSGSRGS
TEPVTYALLDELAAVVWAANMAALELHVPQWTVDGDGTRRPPDRLVFDLDPGPGTSIVHC
CRVAERLHEALTEDGLTAWAKTSGSKGMQLYCAITTDDPAAPSAYAKKLAQRLARETPDR
VTAVMAKAQRTGRVFIDWSQNNPAKTTVAPYSLRGRDHPTVSTPIAWDEVRGCRRPAQLV
FTADDVLDRVSEHGDLLAGLDATRAALP
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggaaggcggtgcccggccaggcggagagcggcgttccagggtgggtgagcccg
atgctggccagtccggacggtggccggttgcgggaggggccggagtgggcgtacgagtac
aagctcgacggcttccgagcgtgcatgagggtcgccgccgacggcagcacggtgttgacc
agccgcaacgacgtcgacttcaccgacgagttcgcggacctgaccggtgtcctaaccgag
gcgctcgatgggcggagcgcggtgctggacggggagatcgtcgtctacaacgacgccggt
cagatcgacttcgggctgttgcaggaacgccgcggccgctatcagacccatcgcagctct
gctcgccgcggcgagccgttcgacgacgtcccggtccggttcctggcgttcgacctgctt
cagctcggcggtacctcgctgttacgcgagccgtacgacgagcgtcggcggcagttgacc
gcgctgccgatgccggatccctatcgggtggaggtggtgcgcgggttcaccttcaccgat
cttgccgcggatcgccggaccccgcggcacctgctcgaccacgtgaaagccagcggtcac
gagggcttggtcgcgaagctccgcaccgccgcctacacccccgggcgccgcagtaacgcc
tggctgaaacacccgctgacccagacgaccgaggtgatcgtctgcggttaccggcccggg
cagggacggctggacggcctgatgggcgggctcctgctcggtgcccacgacccggatagc
ggcgacctgctctacatcggtgacgtcggcaccggcttcaccgaagccgaacgagcccgc
ttgcaggcccggctcgacgtcctcgagcggaagcgacatcccttcgccgagacaccaccc
agggccgacaccgcgagggcgcagtgggtagagccggagctggtgggcgaggtggtgttc
cggcagttcacccgcggcgccggccgcctgcggcacaccgcgtggcgcggcctgcgcgac
gacaagaagcccgccgacgtgctcgccccgcaacgacgcgagcccgcctctaccggagct
cgggcgaagacacctgcccgaaagaccacgcgtgagcagacacaaggtgaaccggtggcc
gaggatcagcccacggcttcaccgggggcgaagatcaccgtccaggccggtgaccggaga
ctcgttctgtccaatttggacaaacctttgtatccggacgggttcacgaagggggaggtg
atcaactactactcgcgtatcgccccggtgctgctgccgcatctggccgggcgtccggtg
acgttcatccgcttcccggacggtgtcggcggggagcagttcttcgagaagaacgtcccg
cacggcgcgccggcgtggctgccgaccgtccggatcgctcgcagcggcagccggggctcg
acagagccggtcacgtacgcgttgctggacgagctcgccgcggtggtgtgggcggcgaac
atggccgcactcgaactccacgttccacaatggaccgtcgacggcgacggcacgcgccgc
ccgccggaccggctggtgttcgacctcgaccccgggccgggaacctcgatcgtgcactgc
tgccgcgtcgccgaacgactgcacgaagccctgaccgaggacgggctgaccgcgtgggcg
aagacgtccggctcgaagggcatgcagctctactgcgccatcaccaccgacgaccctgcc
gccccgtcggcgtacgccaagaaactcgcccaacgcctggcccgggagacaccggaccgg
gtgaccgcggtgatggccaaagcccagcggaccgggcgggtgttcatcgactggtcccag
aacaaccccgccaagaccaccgtcgccccgtactcgctgcgcggccgcgaccatcccacc
gtctccactccgatcgcctgggacgaagtccgcggctgccgccgcccggcacagctggtg
ttcaccgccgacgacgtcctcgaccgcgtcagcgaacacggcgaccttctcgccggactc
gacgccacgcgagcggctctcccatag
DBGET
integrated database retrieval system
