Alistipes onderdonkii subsp. vulgaris: A3BBH6_03330
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Entry
A3BBH6_03330 CDS
T06406
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aok
Alistipes onderdonkii subsp. vulgaris
Pathway
aok03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3BBH6_03330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aok03400
]
A3BBH6_03330 (mfd)
Enzymes [BR:
aok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3BBH6_03330 (mfd)
DNA repair and recombination proteins [BR:
aok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A3BBH6_03330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
GCR
Motif
Other DBs
NCBI-ProteinID:
BBL00097
UniProt:
A0A4Y1WHC1
LinkDB
All DBs
Position
complement(396245..399568)
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AA seq
1107 aa
AA seq
DB search
MTASEQLAQFAAGSKALPKLCREYKKERATVHLKELVGGALSFYAAAAVAKTGGVHIFVA
EDRDAAAYLLNDFYNLLDEKQVYFFPSSYKRSAAYGAEDAQGVVQRTTAMNAVRGFTKGY
LVVCTYPEALAERVVDAATLQRDTIAVKLGDKISIAVLEDALADANFTRVDFVYEPGQYS
VRGGIVDVFSYSESKPYRIDFFGDEVDSIRRFNISSQLSADKLDRVEIVPNLNAGEAPRV
SFVQFAGSSATCWFYDADYVLRRVNDLRRKVLADMEEPGQIDRLLTSRNVLLRDMAGNSV
VALRDNLPERPATAAVVFDTAPQPKFNKNFEMLADDMIRNSLRGYATYILSENKVQVERL
ENIFHQIGRGQAAVRSLSVTLHEGFVDNDLKLCLYTDHQIFDRYQRYRINGEIRRDEQMT
VAELNQLRPGDYVVHIDHGVGRFDGLVKINENGKVHEAIKLVYKDGDVLFVNVHSLHRIS
RYKSGDGEPPKVYKLGNGAWQKLKNAAKKAVKDISRELIALYAKRKASKGFAFTPDSYLQ
HELEASFQWEDTPDQQTTVAAVKKDMESDQPMDRLVCGDVGFGKTEVAIRAAFKAAVDGK
QVAVLVPTTILALQHYRSFSERLRNFPVRVEYLNRTKTTKEVNQIRADLEAGRIDILIGT
HKILGKQIKFRDLGLLIIDEEQKFGVAAKEKLTQMAVNVDTLTLTATPIPRTLQFSLMGS
RDLSVISTPPPNRQPIVTESHVFSEEIIRDAVEAELARGGQVYFVHNRVEDLMSIQGLIT
RVCPKARVAVGHGKMPAEKLEKLIMDFIYGEFDVLVSTTIIENGIDIPNANTIIVDNAQN
FGLSDLHQLRGRVGRSNQKAYCYLLSPPEEMLSSDARRRLRAIEEFSDLGSGFNIAMQDL
DIRGAGNLLGAEQSGFIADIGFETYQKIMNEAIAELRAEGLQVAGLGAAEQDVVEQMHYV
DDAHIEIEVEAGLPDAYVAQQAERLKLYRELDSTKDEAALQAFESRLADRFGPLPREAQE
LLNVVRLRWEAIRLGIERVKVKNGLMILHFVGEQNSPYYKSDTFMELLRKVTQNPARFVL
KQHNNRLAMTVRNVKDIEDGYKTLQQL
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgactgccagcgagcagctggcgcagttcgccgccgggtcgaaggccctgccgaagttg
tgccgcgaatataagaaggagcgcgcaaccgtccacctgaaagagctggtcggcggtgct
ctttcgttttatgcggcggcggcagtggcgaaaacgggaggcgtgcatatcttcgtggcc
gaagaccgggatgccgcggcctacctgctgaacgatttttacaatctgctggacgagaag
caggtctatttcttcccgtcgtcctacaagcgttcggcggcctacggcgccgaggatgcc
cagggcgtagtgcagcgcaccacggcgatgaacgccgtgcggggctttacgaagggatac
ctggtggtctgcacctatcccgaagcgctggccgaacgggtcgtcgacgccgcgacgttg
cagcgcgacacgattgccgtgaagctcggcgacaagatttcgatcgccgtgctggaagat
gcccttgcggatgcgaacttcacgcgtgtcgatttcgtctacgaaccggggcagtactcc
gtgcgcggaggtatcgtcgatgtcttttcctattcggaaagcaagccttaccggatcgac
tttttcggcgacgaggtcgactcgatccgccgtttcaatatttcgagccagctttcggcc
gacaagctcgaccgggtggaaatcgtccccaacctcaatgccggcgaggcaccccgggtg
tcgttcgtgcagttcgcgggttcttcggcaacctgctggttctacgatgccgactacgtg
ctgcgccgtgtcaacgacctgcgccgcaaggtgctcgcggacatggaggagcccgggcag
atcgaccgcctgctgaccagccgcaacgtgctgttgcgcgacatggccggcaacagcgtg
gtggcgctgcgcgacaacctgccggaacgccccgccacggcggccgtggtgttcgacacg
gccccgcagcccaagttcaacaagaatttcgagatgctggccgacgacatgatccgcaat
tcgctgcggggctatgcgacctacatcctctcggagaacaaggtgcaggtcgaacgcctc
gaaaacatcttccaccagataggccgggggcaggccgccgtgcggtcgctctccgttacg
ctgcacgaggggttcgtggacaacgacctgaaactgtgcctctataccgaccaccagatt
ttcgaccgttaccagcgctaccgcatcaacggcgagattcggcgcgacgagcagatgacc
gtcgccgagctgaaccagctccgcccgggcgactatgtggtgcatatcgaccacggcgtg
gggcgtttcgacgggctggtgaagatcaacgagaacggcaaggtgcacgaggccatcaaa
ctggtgtacaaggacggcgacgtgttgttcgtgaacgtccattcgctccaccgtatttcg
cgttacaagtccggcgacggcgagcctccgaaggtctataaactcggcaacggggcatgg
cagaaactcaagaacgccgccaagaaggccgtcaaggatatctcgcgcgagctgatcgcc
ctctatgccaagcgcaaggccagcaaagggttcgcattcacacccgacagttacctgcag
cacgagctggaggcgtcgttccagtgggaggacacccccgaccagcagacgaccgtcgcg
gccgtcaagaaggacatggagtccgaccagccgatggacaggctggtctgcggcgacgtg
ggcttcggcaagaccgaggtggcgatccgcgcggcgttcaaggctgccgtggacggcaag
caggtggcggtgctggtgccgacgacgatcctcgccctgcaacactaccgctccttctcg
gaacgcctgcgcaatttccccgtgcgggtcgaatacctcaaccgcaccaagaccacgaag
gaggtgaaccagattcgcgccgacctggaggcgggacgcatcgacatcctgatcggcacc
cataagatactgggcaagcagatcaaattccgcgacctggggctgctgatcattgacgag
gaacagaagttcggcgtcgcggccaaggagaaactcacgcagatggccgtcaatgtcgat
acgctgaccctgacggcgacgccgatcccgcgcacgctgcaattttcgctcatgggctcg
cgcgacctgtcggtcatctcgaccccgccgcccaaccgccagccgatcgtcaccgagtcg
catgtcttttccgaggagatcatccgcgacgccgtcgaggccgagctcgcacgcggtggc
caggtctatttcgtccataaccgcgtcgaagacctgatgtccatccaagggcttatcacg
cgcgtatgccccaaggcccgcgtagccgtcggacacggcaagatgccggccgagaagctc
gaaaaactgattatggattttatctacggggagttcgacgtgctcgtttcgaccacgatc
atcgagaacggcatcgacatccccaatgccaatacgatcatcgtcgacaatgcccagaac
ttcggcctgagcgacttgcatcaattgcgcgggcgcgtggggcgcagcaaccagaaagcc
tactgctacctgctctcgccgcccgaggagatgctgtcgtccgatgcgcggcgccgcctg
cgggcgatcgaggagttctccgacctggggtcggggttcaacattgcgatgcaggatctc
gacatccgcggcgcgggcaacctgctgggtgccgagcagagcgggtttatcgccgacatc
ggtttcgaaacctaccagaaaatcatgaacgaggcgatcgccgagctgcgggccgaaggc
ttgcaggtggcgggtctgggtgccgccgagcaggatgtcgtggagcagatgcattacgtg
gatgacgcgcacatcgaaatagaggtcgaggccgggttgcccgatgcctacgtggcgcag
caggccgaacgcctgaaactttaccgcgagctcgactcgaccaaggacgaagccgcgttg
caggccttcgagagccgtctggcagaccgtttcggccccctgccgcgcgaagcgcaggaa
ctgctcaacgtcgtgcgcctgcgctgggaggcgattcgcctcggcatcgaacgggtgaag
gtcaagaacgggctgatgatcctccacttcgtcggcgagcagaattcgccctattacaaa
agcgatacctttatggagttgcttcgcaaggtgacgcaaaatcccgccagatttgtgctc
aaacagcacaataatcgtctggcgatgaccgttaggaatgtcaaagacattgaggacggg
tataaaacactgcaacagctttga
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