Bradyrhizobium oligotrophicum: S58_38210
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Entry
S58_38210 CDS
T02484
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aol
Bradyrhizobium oligotrophicum
Pathway
aol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
S58_38210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aol03400
]
S58_38210
Enzymes [BR:
aol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
S58_38210
DNA repair and recombination proteins [BR:
aol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
S58_38210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_16
RecG_dom3_C
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BAM89811
UniProt:
M4Z956
LinkDB
All DBs
Position
4342989..4346504
Genome browser
AA seq
1171 aa
AA seq
DB search
MKSPVKSPAEHLAPGRALTLANVAEGAEGLVVSDLARAIAAKPKPPAVSLAVVCRDGNRM
QQLARALDFFAPDLPVMQFPAWDCQPYDRVSPHGGILAQRVTTLARLSRLAGSDKPLIVL
TTVNAIVQRVPSRDTMAGQALSVAPGHVVPMDSVVAWLEHNGYHRSSTVRESGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRYPGMEHWLPLFHDKMETLFDYLPNTPVVIEPQGE
DAARERFKQIIDYYDARREAMEHPGGGAIYKPLTVDRLYLTSSEWAERLATVPLARMTQF
AVPEGTGVVDIGARQGRSFAPERNDAAVNVFEAVVAHVQALQSVRKKVVIALWSEGSRDR
MASMLKDHKLIHVTSVNTWRVVQATPRNETMLALLGLETGFETDQIAVISEQDILGDRLV
RPRKASRKLDNFISEVTSLAVGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAGETK
LYLPVENIELLSRYGSDQTNVELDRLGGSGWQTRKAKLKNRIREMAGELIKIAAERMLHE
APKLPVQAGLYDEFCARFPYDETEDQLGAIQATLADLEAGRPMDRLVCGDVGFGKTEVAL
RAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLVSTKELNQVKKGL
TDGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLSATPI
PRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPVMIREALLRERYRGGQAFYVVPRI
DDLAEVKEFLDKTVPEMKVAVAHGQMAPTVIEDIISAFYDGKFDILLSTTIVESGLDIPR
ANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSTHKISPQAEKRLGVLQSLETL
GAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAIENLKAGITEPTVDRWS
PQITIGMPVLIPEDYVSDLSVRLSLYRRLADLETDEEIENFAAELRDRFGKLPDETRYLF
KVAAIKNYCRRANVEKVDAGPKGAVIAFRDNSFAYPDRLVAFIKRHGQAAKVRPDMKVVF
LQLWETPEERLAGTTDILKELAELAEKKKAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcccggtcaagtcgcctgccgagcacctcgcgccggggcgcgcgctgacgctg
gccaacgtcgcagagggcgccgaaggcctcgtcgtctccgacctcgcccgcgcgattgcc
gccaagccgaagcctccggcggtgagcctcgccgtcgtctgccgcgatggcaatcggatg
cagcagctggcacgggcgctggacttctttgctcccgatctgcccgtgatgcagttcccg
gcctgggactgccagccttacgaccgcgtctcgccgcatggcggcatcctggcccagcgc
gtgaccactttggcgcggctgtcgcgcctcgccggcagcgacaagccgctgatcgtgctg
accaccgtgaatgccatcgtgcagcgggtgccgtcgcgcgacaccatggcggggcaggcg
ctgtcggtcgcgcccggccatgtcgtgccgatggactccgtcgtcgcctggctcgagcac
aacggctaccaccgatcgtcgaccgtgcgtgagagcggcgaatatgccgtccgcggcggc
atcctcgatctgtttccggccggcctcgatcagccggtccgcttcgacttcttcggcgac
agcctggaatcgatccgcaccttcgacgccgagacccagcgcaccttgctcgacatgcgc
tcgctcgacctggtgccggtgtccgaattccagctcgtcaccgacaccatccgccgcttc
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgacgcgctgtacgaggcg
gtcagcgaaggccggcgctatcccggcatggagcactggctgccgctgttccacgacaag
atggagaccttgttcgactacctgccgaacacgcccgtcgtgatcgagccgcagggcgag
gacgcggcacgcgaacgcttcaagcagatcatcgactactacgacgcgcgccgcgaggcg
atggagcatcccggcggcggcgcgatctacaagccgctgacggtcgaccggctgtatctg
acgtcgtccgaatgggctgaacggctggccaccgtgccgctggcgcggatgacgcagttc
gccgtgccggaaggcaccggtgtggtggacatcggcgcgcggcagggccgcagctttgcg
cccgagcgcaacgatgctgcggtcaacgtgttcgaggccgtggtggcgcatgtgcaggcg
ctgcagtcggtgcgcaagaaggtcgtgatcgcgctgtggagcgaaggctcgcgcgaccgc
atggccagcatgttgaaggaccacaagctgatccacgtcaccagcgtcaacacctggcgc
gtggtgcaggcgacgccgcgcaacgagaccatgctcgcgctgctgggtctggagaccggt
ttcgagaccgaccagatcgccgtcatctccgagcaggacattctcggcgaccgcctggtg
cgaccgcgcaaggcgagccgcaagctcgacaacttcatctccgaagtgacaagcctcgcg
gtcggcgacatcgtcgtccatgtcgatcacggcatcggccgcttcgtcggcctgcagacg
ctcgaagtcgccggcgcgccgcatgactgtctcgagctgcgctatgccggtgagaccaag
ctgtatctgccggtcgagaacatcgagctgctgtcgcgctacggctctgaccagaccaat
gtcgagctcgacaggctcggcggctccggctggcagacccgcaaggccaagctgaagaac
cgcatccgcgaaatggccggcgagctgatcaagatcgccgccgagcgcatgctgcacgag
gcgccgaagctgccggtgcaggccggcctctatgacgagttctgcgcgcgcttcccctac
gacgagaccgaggaccagctcggcgccatccaggcgacacttgccgatctcgaagcggga
cggccgatggaccggctggtctgcggcgacgtcggcttcggcaagaccgaggtggcgctg
cgcgcggcctttgcggtcgcgctcgaaggcaagcaggtggcggtcgtcgtgccgaccacg
cttctcgcccgccagcacgccaagaccttcaccgagcgcttcaagggttttccggtcaac
gtcgcgcaggcgtcgcgccttgtctcgaccaaggagctcaaccaggtcaagaagggcctc
accgacggctcggtcgacatcgtcgtcggcacccacgcgctgctcggcaaagcgatcaag
ttccgcgacctcggcctcgtcatcgtcgacgaggagcaacatttcggcgtcagccacaag
gagcggctgaagcagttgcgcgcggaagtccacgtgctgacgttgtcggcgacgccgatc
ccgcgcacgctgcaacttgctttgacgggcgtgcgcgagctgtcgatcatcgcttctcca
ccggtcgaccgtctggccgtgcgcaccttcgtggcgccgcatgatccggtgatgatccgc
gaggccctgctgcgcgagcgctatcgcggcggccaagcgttctacgtcgtgccgcgcatc
gacgatctcgccgaggtcaaggaattcctcgacaagaccgtgccggaaatgaaggtcgcg
gtcgcgcatggccagatggcgccgaccgtgatcgaggatatcatctcggcgttctacgac
ggcaagttcgacattctgctgtcgacgacgatcgtcgagtcgggcctcgacattccccgc
gccaacacgctgatcgtgcaccgcgccgacatgttcggcctcgcccagctctatcagctg
cgcggccgcgtcggccgctccaagctgcgcgcctacgcgctgttcaccttgccgtccacg
cacaagatcagcccgcaggccgagaagcgcctgggcgtgctgcagtcgctggagacgctt
ggggcgggcttccagctcgccagccacgatctcgacatccgcggcgccggcaatctcctc
ggcgacgagcagtccggccacatcaaggaggtcggcttcgagctctatcagtcgatgctg
gaggaggcgatcgagaacctcaaggccggcatcaccgagccgaccgtggaccgctggtcg
ccgcagatcaccatcggcatgcccgtgctgattcccgaggactacgtctccgatctctcg
gtgcggctgtcgctgtaccgaaggctcgccgatctcgaaactgacgaggagatcgagaac
ttcgccgccgaactgcgcgaccgcttcggcaagcttccggacgagacgcgctatctgttc
aaggtcgccgcgatcaagaactactgccggagagccaatgtcgagaaggtcgatgccggc
ccgaagggcgccgtcatcgccttccgcgacaacagcttcgcctatccggaccgcctcgtc
gccttcatcaaacgccacggccaggccgccaaggttcggcccgacatgaaggtcgtgttc
ctgcagctctgggagacgccagaggagcggctcgctggcacgacggatattctcaaggag
ctggctgagctcgctgagaagaagaaggcggcgtag
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