Aquabacterium olei: DEH84_10495
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Entry
DEH84_10495 CDS
T05429
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aon
Aquabacterium olei
Pathway
aon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DEH84_10495 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aon03400
]
DEH84_10495 (mfd)
Enzymes [BR:
aon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DEH84_10495 (mfd)
DNA repair and recombination proteins [BR:
aon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DEH84_10495 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
DUF4217
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWI55217
UniProt:
A0A2U8FWD6
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All DBs
Position
2327930..2331385
Genome browser
AA seq
1151 aa
AA seq
DB search
MPLPSIAPGKRYTLPRPPGSADALLLAQYAQGRKAQRQLTCVITADPADTQRLLDEMAFF
APDLRCSVFPDWETLPYDTFSPHQDLISERLATLWKIQQGVGAETGVDVVLLPATTALTR
LAPPSFLAAYTFHFKQKQKLDEAALKSQLTLAGYNHVSQVVSPGEYAVRGGLIDLYPMGS
PVPYRVDLFGDEVDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDEAARGAFRNRWRERIE
GDPTKSRIYKDIGNGVATAGIEYYLPLFFDETATFFGHLGEQAALVLHGDIDEALRRFWT
ETKERHRFLQHDPERPILPPEDLYLKVEDFFTLANVHATLVVRGSEPVDWARPLPDLAVT
RGGQDPLNKLESHINKTAARVLVVAESAGRRESLMELLRDHRINLPSLDTLQAFAESDHR
HAITAAPLAAGFIWQDGERALHLVTETELFDATPTTRRRKKNEQATDVDSLIKDLSELNV
GDPVVHSNHGIGRYQGLINLDLGDGPSEFLHLEYADKATLYVPVSQLHLISRYTGVSAEE
APLHKLGSPQWDKAKRKAAEQVRDTAAELLNLYARRAAREGFAFRFSAQDYEAFAASFGF
EETPDQRAAIHAVVQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAPTT
LLAEQHYQNISDRFSQWPVKVAEMSRFRSAKEIKAAMQGLEDGSIDIIVGTHKLLSESVK
FKRLGLLVIDEEHRFGVRHKEAIKAMRADIDVLTLTATPIPRTLGMAMEGLRDLSVIATA
PQRRLAIKTFVRSESSNTIREAVLRELKRGGQVYFLHNEVESIENRRDKLVELLPEARIG
IAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPSANTIVITRADKFGLAQLHQL
RGRVGRSHHQAYAYLLVPDVEGLTKQAAQRLDAIQNMEELGSGFYLAMHDLEIRGAGEVL
GDSQSGNMMEVGFQLYNEMLAEAVKSLKAGKEPDLLSPLGMFGSNTDVNLHAPALLPDAF
CGDVHVRLSLYKRLATADSLDKIETMLEEIVDRFGKLPPQAQALFDTHKLRVQSKPYGVI
KIDAAPGVINITFRPNPPVEPMRIIELVQKNRHIKLAGNDKLRIEKELKDPKDRAQYVRD
LLRALGQPIKA
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
ctgcccctgccctccatcgcccccggcaaacgctacaccctgccccgcccgcccggctcg
gccgatgcgctgctgctggcgcagtacgcccaggggcgcaaggcgcagcgccagctgacg
tgcgtgatcacggccgatccggccgacacgcagcgcctgctggatgagatggcgttcttc
gcgcccgatctgcgctgcagcgtgttccccgactgggagacgttgccgtatgacaccttc
tcgccgcaccaggacctgatctcggagcggctggccacgctgtggaagatccagcagggc
gtgggtgccgagaccggtgtggacgtggtgctgctgccggccaccaccgcgctgacgcgc
ctggcgccgccctccttcctcgccgcctacaccttccacttcaagcaaaagcagaagctg
gacgaggccgcgctgaagtcgcagctgacgctggcgggctacaaccacgtgagccaggtc
gtgtcgccgggcgagtacgcggtgcgcggcgggctgatcgacctctacccgatgggctcg
cccgtgccgtatcgcgtggacctgttcggtgacgaggtcgactcgatccgcaccttcgat
ccggacacgcagcgcagcctgtaccccgtgcccgaggtgcgcctgctgccgggtcgcgag
ttcccgatggacgaggcggcgcgcggcgcgttccgcaaccgctggcgcgagcgcattgag
ggtgacccgaccaagtcccgcatctacaaggacatcggcaacggcgtggccacggcgggc
atcgagtactacctgccgctgttcttcgatgagacggcgaccttcttcggccatctgggc
gagcaggcggccctggtgctgcacggtgacatcgacgaggcgctgcgccgcttctggacg
gagaccaaggagcgccaccgcttcctgcagcacgacccggaacgccccatcctgccacca
gaagacctgtacctgaaggtggaggacttcttcacgctggccaatgtgcatgcgacgctg
gtggtgcgtggcagcgagccggtggactgggcgcgcccgctgcccgatctggcggtgacc
cgaggcgggcaggacccgctgaacaagctcgaatcgcacatcaacaagacggcggcgcgc
gtgctggtggtggccgaaagcgccggccgccgcgaaagcctgatggagctgctgcgcgac
caccgcatcaacctgccctcgctggacacgctgcaggcctttgccgagagcgaccaccgc
catgcgatcacggccgcgccgctggctgcgggcttcatctggcaggacggcgagcgggcg
ctgcacctcgtcaccgaaaccgagctgttcgacgcgacgccgaccacgcgccggcgcaag
aagaacgagcaggccaccgacgtcgactcgctgatcaaggacctgagcgagctgaacgtg
ggcgacccggtggtgcacagcaaccacggcatcgggcgctaccagggtctgatcaacctc
gacctgggcgacggcccttccgagttcctgcacctggagtacgccgacaaggccacgctg
tacgtgcccgtgtcgcagttgcacctgatcagccgctacaccggcgtgagcgcagaagaa
gcgccgctgcacaagctgggctcgccgcagtgggacaaggccaagcgcaaggccgccgag
caggtgcgcgacaccgcggccgagttgctgaacctgtacgcgcggcgtgcggcgcgcgag
ggctttgccttccgcttctcggcgcaggattacgaggcctttgcggccagcttcggcttc
gaggagacgcccgatcagcgcgcggccatccacgcggtcgtgcaagacatgatcagccca
cggccgatggaccgcctggtgtgcggcgacgtgggcttcggcaagaccgaggtggcactg
cgggcggccttcgtggccgtgacgggcggcaagcaggtggcgctgctggcgcccaccacg
ctgctggccgagcagcactaccagaacatctcggaccgcttctcgcagtggccggtgaag
gtggccgagatgtcgcgcttccgctcggccaaggagatcaaggcggcgatgcaggggctg
gaagacggctcgatcgacatcatcgtgggcacgcacaagctgctgagcgagtccgtcaag
ttcaagcgcctgggtctgctcgtcatcgacgaggagcaccgtttcggcgtgcgccacaag
gaggccatcaaggccatgcgcgcggacatcgacgtgctgacgctgacggccacgccgatc
ccgaggacgctgggcatggcgatggaaggcctgcgcgacctgagcgtgatcgccaccgca
ccgcagcggcgtctggcgatcaagacctttgtgcgcagcgaaagcagcaacacgatccgc
gaggcggtgctgcgcgagttgaagcgcggcggccaggtctacttcctgcacaacgaggtg
gagtccatcgagaaccggcgcgacaagctggtggagttgctgcccgaggcgcgcatcggc
atcgcccacggccagatgccggagcgcgagctggagcgcgtgatgcgcgacttcgtggcc
cagcgcttcaacgtgctgctgtgctcgaccatcatcgagaccggcatcgacgtgccttcg
gccaacaccatcgtgatcacgcgggccgacaagttcggcctggcgcagttgcaccagctg
cgcgggcgcgtgggccgctcgcaccaccaggcctacgcctacctgctcgtgcccgatgtg
gaaggcctgaccaagcaggccgcgcagcgcctggacgccatccagaacatggaagagctg
ggcagcggcttctatctggccatgcacgacctggagatccgtggcgccggcgaggtgctg
ggcgacagccagagcggcaacatgatggaggtgggcttccagctctacaacgagatgctg
gccgaggcggtgaagtcgctgaaggcgggcaaggagcccgacctgctgtcgccgctgggc
atgtttggcagcaacaccgatgtgaacctgcacgcgcccgcgctgctgcccgatgccttc
tgtggcgacgtgcacgtgcgcctgagcctgtacaagcgcctggccaccgccgactctctc
gacaagatcgagaccatgctggaggagatcgtcgaccgcttcggcaagctgccgccgcag
gcgcaggcgctgttcgacacgcacaagctgcgcgtgcagtccaagccctatggcgtgatc
aagatcgacgcggcgcccggcgtgatcaacatcaccttccggcccaacccgccggtcgag
cccatgcgcatcatcgagctggtgcagaagaaccgccacatcaagctggcgggcaacgac
aagctgcgcatcgagaaggaactgaaggacccgaaggaccgcgcacagtacgtgcgcgac
ctgctgcgggccctcggtcagccgatcaaggcctga
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integrated database retrieval system
