KEGG   Aquabacterium olei: DEH84_14965
Entry
DEH84_14965       CDS       T05429                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
aon  Aquabacterium olei
Pathway
aon03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:aon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DEH84_14965 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aon03400]
    DEH84_14965 (ligD)
Enzymes [BR:aon01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DEH84_14965 (ligD)
DNA repair and recombination proteins [BR:aon03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DEH84_14965 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AWI54578
UniProt: A0A2U8FUW1
LinkDB
Position
3329906..3332533
AA seq 875 aa
MKPAGDALSRYRAKRNFERTEEPPGDPGRSGNRLGFVIQKHAATRLHYDFRLELDGVLLS
WAVPKGPSYDPTERRMAIEVEAHPLSYARFEGRIPPGQYGAGTVIVWDEGWWTPEGDPQQ
ALKAGKLVFTLHGQKMQGRWELVRIARGGERQPPWLLFKKRDAHARPHAEFDVVSAWPDS
VLAHPLSEADRRAVFPAVHAPAPAPALPVSHDDVENPGEPPSPGSLRGARKAALPATLAP
QLATLASALPAEGEWRCELKLDGYRLLIRIARGRARLLTRSGLDWSDRMPHLVKAFAALG
LNAGWLDGEIVVLGPQGTPDFHALQNAFDAGRRTDDIVCFLFDVPYADGHDLRAVPLQAR
RAWLRGLLATHATRHDDGLLRFSADFDAPVQTVLGTACALGLEGVMAKRQDAPYVSARTE
TWLKLKCRQRQEFVVCGYAPRSDDADRVGALLLGVHDAQGRLVPAGNVGTGWSAEQARAL
RQRLAPLEMPSPPFDGQAVPEAGTQIGRRTGRKRPPTRSETEARWLRPQQVAEVAFSAWT
PDHRIRHATFIALRDDKPARAIVREQPRLPDTPQPMSRPLKVTHGERVLDATSGVTKLDL
VRYYAAVANRMLPHLQGRPCALLRAPEGVGGALFFQRHGGPGRAPELTELDPALWPGHAA
LLSVDHADALVAAAQWNAIEFHTWNAPARHMDRPDRMVFDLDPGEGTIWPQVQEGALLVR
TLLEELRLACWLKTSGGKGLHVVVPIVPRWPHEVVKALSKAMVQHLARTLPSRFVARSGP
ANRVGRIFVDYLRNGHAATTVAAFSARARPGLGVSMPVAWDDLASLRSGAHWTVQTAREH
LSFQSVDPWADYARTPQALDDAMAAMGLRPASVAS
NT seq 2628 nt   +upstreamnt  +downstreamnt
gtgaagcccgccggcgacgcgctgtcgcgctaccgggccaagcgcaacttcgagcgcacg
gaggagccgccgggcgatcccgggcgctccggcaaccgcctgggcttcgtcatccagaag
cacgcggccacccggctgcactacgacttccggctggagctcgatggcgtgctgctttcc
tgggccgtgcccaaagggccgagctatgacccgaccgagcgtcgcatggcgatcgaagtc
gaagctcatccactgagctatgcccgttttgaagggcgcatcccaccgggccagtacggg
gcgggcaccgtcatcgtgtgggacgagggctggtggacgccggagggcgatccgcagcag
gcactgaaggcagggaagctcgtgttcaccctgcacggccagaagatgcagggccggtgg
gagctggtgcgcatcgcacgcggcggcgagcgccagccgccctggctgctgttcaagaag
cgcgacgcgcatgcgcgaccccatgccgagttcgatgtggtgtctgcgtggccggacagc
gtgctcgcccaccccctctccgaggccgatcgccgcgcggtgtttcccgccgtgcacgcg
cctgcgcctgcgcctgctttgcccgtgtcgcatgacgacgtggaaaaccccggtgagccc
ccctctccaggcagcctgcggggcgcgcgcaaggccgccctgcccgccaccctggcgccc
cagttggccacgctcgcatcggcgctgccggccgaaggcgaatggcgctgcgaactcaaa
ctcgacggctatcgcctgctcatccgcatcgcccgcgggcgggcccggctgctcacacgc
agcgggctcgactggtctgatcgcatgccgcatctggtgaaggcctttgccgcgctgggc
ctgaacgccggatggctggacggcgagatcgtcgtgctcggcccgcagggcacgcccgat
ttccatgccctgcagaatgcgttcgacgccggccggcggaccgacgacatcgtttgtttt
ctgttcgatgtgccctacgccgatggccacgacctgcgggcggtgcccctgcaggcaagg
cgggcgtggctgcggggtctgctggccacccacgccacccggcacgacgacggcctgctg
cgtttcagtgccgacttcgacgcgcctgtgcagacggtgctgggcacggcctgtgcgctc
ggcctggaaggcgtgatggccaaacgccaggatgcaccctatgtgtcggcacgcacggag
acgtggctgaaactgaagtgccgacagcgtcaggagttcgtggtgtgcggctacgccccg
cgcagtgacgatgcagaccgcgtgggcgccctgctgctgggtgtgcacgacgcacaaggg
cggctggtgccggccggcaacgtgggcacgggctggagcgccgagcaggcgcgcgcgctg
cgccagcgattggccccgctggagatgcccagcccgcccttcgacggccaggcagtgccc
gaagccggcacgcagatcggccggcgcaccggccgcaagcgcccgcccacccgcagcgag
accgaggcccggtggctgcggcctcaacaggtggccgaagtggcgttcagcgcctggacg
cccgaccaccgcatccggcacgccactttcatcgccctgcgcgacgacaagccggcgcgg
gccatcgtgcgagagcagccgcgtctccccgacaccccacagcccatgtcgcgcccgctc
aaggtcacccatggcgagcgggtgctcgacgcgacctcgggtgtcaccaagctcgatctc
gttcgttactacgccgccgtggccaaccgcatgctgccgcacctgcaaggccgtccatgt
gcgcttttacgcgccccggaaggcgtgggcggcgcgctgttctttcaacgacacggcggc
cccggccgcgcaccggagttgaccgagctggacccggcgttgtggcccggccacgcggca
ctgctgtcggtggaccacgccgatgccctggtggccgccgcgcagtggaacgccatcgag
ttccacacctggaacgcgcccgcccgccacatggaccgccccgatcgcatggtgttcgac
cttgaccccggcgaaggcaccatctggccgcaggtgcaggaaggcgcgttgctggtgcgc
actctgctggaggagctgaggctggcctgctggctcaagaccagtggcggcaagggcctg
catgtggtggtgcccatcgtgccgcgctggccgcacgaggtggtcaaggcgctgtcgaag
gcaatggtgcagcacctggcgcgcacgctgccgtcgcgcttcgtggcacgcagcgggccg
gccaaccgtgtgggccgcatctttgtcgactacctgcgcaacggccatgccgcgaccacc
gtggcggccttctcggcgcgggcgcgccccggcctcggcgtgtcgatgcccgtagcatgg
gacgacctggcgagcctgcgcagcggcgcacactggacggtgcagaccgcgcgtgagcac
ctgtccttccagtcggtcgacccgtgggccgattacgcccgcacgcctcaggcgctcgat
gacgccatggctgccatggggctgcgcccggcgtcagtggcatcctga

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