Aquabacterium olei: DEH84_14965
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Entry
DEH84_14965 CDS
T05429
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aon
Aquabacterium olei
Pathway
aon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DEH84_14965 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aon03400
]
DEH84_14965 (ligD)
Enzymes [BR:
aon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DEH84_14965 (ligD)
DNA repair and recombination proteins [BR:
aon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DEH84_14965 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWI54578
UniProt:
A0A2U8FUW1
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All DBs
Position
3329906..3332533
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AA seq
875 aa
AA seq
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MKPAGDALSRYRAKRNFERTEEPPGDPGRSGNRLGFVIQKHAATRLHYDFRLELDGVLLS
WAVPKGPSYDPTERRMAIEVEAHPLSYARFEGRIPPGQYGAGTVIVWDEGWWTPEGDPQQ
ALKAGKLVFTLHGQKMQGRWELVRIARGGERQPPWLLFKKRDAHARPHAEFDVVSAWPDS
VLAHPLSEADRRAVFPAVHAPAPAPALPVSHDDVENPGEPPSPGSLRGARKAALPATLAP
QLATLASALPAEGEWRCELKLDGYRLLIRIARGRARLLTRSGLDWSDRMPHLVKAFAALG
LNAGWLDGEIVVLGPQGTPDFHALQNAFDAGRRTDDIVCFLFDVPYADGHDLRAVPLQAR
RAWLRGLLATHATRHDDGLLRFSADFDAPVQTVLGTACALGLEGVMAKRQDAPYVSARTE
TWLKLKCRQRQEFVVCGYAPRSDDADRVGALLLGVHDAQGRLVPAGNVGTGWSAEQARAL
RQRLAPLEMPSPPFDGQAVPEAGTQIGRRTGRKRPPTRSETEARWLRPQQVAEVAFSAWT
PDHRIRHATFIALRDDKPARAIVREQPRLPDTPQPMSRPLKVTHGERVLDATSGVTKLDL
VRYYAAVANRMLPHLQGRPCALLRAPEGVGGALFFQRHGGPGRAPELTELDPALWPGHAA
LLSVDHADALVAAAQWNAIEFHTWNAPARHMDRPDRMVFDLDPGEGTIWPQVQEGALLVR
TLLEELRLACWLKTSGGKGLHVVVPIVPRWPHEVVKALSKAMVQHLARTLPSRFVARSGP
ANRVGRIFVDYLRNGHAATTVAAFSARARPGLGVSMPVAWDDLASLRSGAHWTVQTAREH
LSFQSVDPWADYARTPQALDDAMAAMGLRPASVAS
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
gtgaagcccgccggcgacgcgctgtcgcgctaccgggccaagcgcaacttcgagcgcacg
gaggagccgccgggcgatcccgggcgctccggcaaccgcctgggcttcgtcatccagaag
cacgcggccacccggctgcactacgacttccggctggagctcgatggcgtgctgctttcc
tgggccgtgcccaaagggccgagctatgacccgaccgagcgtcgcatggcgatcgaagtc
gaagctcatccactgagctatgcccgttttgaagggcgcatcccaccgggccagtacggg
gcgggcaccgtcatcgtgtgggacgagggctggtggacgccggagggcgatccgcagcag
gcactgaaggcagggaagctcgtgttcaccctgcacggccagaagatgcagggccggtgg
gagctggtgcgcatcgcacgcggcggcgagcgccagccgccctggctgctgttcaagaag
cgcgacgcgcatgcgcgaccccatgccgagttcgatgtggtgtctgcgtggccggacagc
gtgctcgcccaccccctctccgaggccgatcgccgcgcggtgtttcccgccgtgcacgcg
cctgcgcctgcgcctgctttgcccgtgtcgcatgacgacgtggaaaaccccggtgagccc
ccctctccaggcagcctgcggggcgcgcgcaaggccgccctgcccgccaccctggcgccc
cagttggccacgctcgcatcggcgctgccggccgaaggcgaatggcgctgcgaactcaaa
ctcgacggctatcgcctgctcatccgcatcgcccgcgggcgggcccggctgctcacacgc
agcgggctcgactggtctgatcgcatgccgcatctggtgaaggcctttgccgcgctgggc
ctgaacgccggatggctggacggcgagatcgtcgtgctcggcccgcagggcacgcccgat
ttccatgccctgcagaatgcgttcgacgccggccggcggaccgacgacatcgtttgtttt
ctgttcgatgtgccctacgccgatggccacgacctgcgggcggtgcccctgcaggcaagg
cgggcgtggctgcggggtctgctggccacccacgccacccggcacgacgacggcctgctg
cgtttcagtgccgacttcgacgcgcctgtgcagacggtgctgggcacggcctgtgcgctc
ggcctggaaggcgtgatggccaaacgccaggatgcaccctatgtgtcggcacgcacggag
acgtggctgaaactgaagtgccgacagcgtcaggagttcgtggtgtgcggctacgccccg
cgcagtgacgatgcagaccgcgtgggcgccctgctgctgggtgtgcacgacgcacaaggg
cggctggtgccggccggcaacgtgggcacgggctggagcgccgagcaggcgcgcgcgctg
cgccagcgattggccccgctggagatgcccagcccgcccttcgacggccaggcagtgccc
gaagccggcacgcagatcggccggcgcaccggccgcaagcgcccgcccacccgcagcgag
accgaggcccggtggctgcggcctcaacaggtggccgaagtggcgttcagcgcctggacg
cccgaccaccgcatccggcacgccactttcatcgccctgcgcgacgacaagccggcgcgg
gccatcgtgcgagagcagccgcgtctccccgacaccccacagcccatgtcgcgcccgctc
aaggtcacccatggcgagcgggtgctcgacgcgacctcgggtgtcaccaagctcgatctc
gttcgttactacgccgccgtggccaaccgcatgctgccgcacctgcaaggccgtccatgt
gcgcttttacgcgccccggaaggcgtgggcggcgcgctgttctttcaacgacacggcggc
cccggccgcgcaccggagttgaccgagctggacccggcgttgtggcccggccacgcggca
ctgctgtcggtggaccacgccgatgccctggtggccgccgcgcagtggaacgccatcgag
ttccacacctggaacgcgcccgcccgccacatggaccgccccgatcgcatggtgttcgac
cttgaccccggcgaaggcaccatctggccgcaggtgcaggaaggcgcgttgctggtgcgc
actctgctggaggagctgaggctggcctgctggctcaagaccagtggcggcaagggcctg
catgtggtggtgcccatcgtgccgcgctggccgcacgaggtggtcaaggcgctgtcgaag
gcaatggtgcagcacctggcgcgcacgctgccgtcgcgcttcgtggcacgcagcgggccg
gccaaccgtgtgggccgcatctttgtcgactacctgcgcaacggccatgccgcgaccacc
gtggcggccttctcggcgcgggcgcgccccggcctcggcgtgtcgatgcccgtagcatgg
gacgacctggcgagcctgcgcagcggcgcacactggacggtgcagaccgcgcgtgagcac
ctgtccttccagtcggtcgacccgtgggccgattacgcccgcacgcctcaggcgctcgat
gacgccatggctgccatggggctgcgcccggcgtcagtggcatcctga
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