Actinomyces oris: AXE84_06510
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Entry
AXE84_06510 CDS
T04280
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aos
Actinomyces oris
Pathway
aos03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AXE84_06510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aos03400
]
AXE84_06510
Enzymes [BR:
aos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AXE84_06510
DNA repair and recombination proteins [BR:
aos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AXE84_06510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AMD99097
UniProt:
A0A0X8K211
LinkDB
All DBs
Position
1591089..1594856
Genome browser
AA seq
1255 aa
AA seq
DB search
MLLTALLPPLLADADIARTVRAASSRSRTDRSLVVAPGARPAVLAAMALGEEGVQRVAGG
DAPATGSAEVSGTPLLVVTATGREAEETALALRSYLPADDVAVMPAWETLPHERLSPRAD
TVAQRLSVLRRLAHPEEGGAIRVLIVPVRALLAPVIAGLGELEPVQLAPGLTVGLEETAR
RLEAAAYTRVDMVESRGEYAVRGGILDVFPPSEPRPVRVDFFGDEIDEVSSFAVADQRTI
ETLGAVTATACRELVLTDAVRERAAALVDAVPGAADMLEKISQGIAVEGMESLAPVLVEA
MVPLLDLVGDRLTVLLEPERVRKRAEDLTATTTEFLAAAWTSAASGGTVPVDLSAAAFAH
LAEARALALSSNRGWWSFTALAAGPETTRLDLSDPHTYRGELERAVADLGRLARQGWTVV
VATDGPGPGRRMAQLLGDGDVPARIVDQLSEVGELGRDGDWAPDPATPAEDTVDETDADG
SAGAPTAGPGDGVVRVTQASAGHGFLAEGLRLALIAESDLTGRASAGPRERRSLPARRAR
RSVDPLSLHAGDLVVHAQHGVGRFIELSRRTVGGARSSATREYLVIEYAPSKRGQPGDRL
LVPTDALDQVTKYVGGDSPALSKMGGADWAKTKSKARKAVREIAGELVRLYAARAATTGH
AFSPDTPWQTELEEAFPYTETPDQLSTIDEVKADMEKAQPMDRLVCGDVGYGKTEIAVRA
AFKAVQDGKQVAVLVPTTLLVSQHAETFTERYAGFPVTVGALSRFQDAAESAKVLEGLEK
GSVDVVVGTHRLITGQVKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSMSATPIPR
TLEMAVTGLREMSTLATPPEDRHPILTYVGAYETKQVSAAIRRELLREGQVFFVHNRVED
IDATAARLAELVPEARVATAHGQMNEHQLEAVIDSFWRKETDVLVCTTIVETGLDVSNAN
TLIVDRADRMGLSQLHQLRGRVGRGRERAYAYFLYPSDKPLTETALERLRTIATNTDLGA
GMQVAMKDLEIRGSGNLLGGEQSGHIAGVGFDLYVRMVSEAVAAYKKALARSGKAGADVI
GFEEGDEEDVELRIELPVDATVPEDYIPHERLRLEAYTKFAAARSGEQVDDVLEELADRY
GPVPEATSRLAALARLRALAAELGVREIVAQGKSVRFAPVDLPESARMKVTRLYPGTVLK
PATRTIVVPAPGTNRMGGAALSGEEVVRWAEVLLRAVVQGDASYETEATTYRKRR
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
gtgctcctgactgcgctcctgcctccgctgctcgccgacgccgacatcgcccgtaccgtt
cgcgccgcctcctcccgctcgcgcaccgaccgcagcctcgtcgtcgccccgggcgcccgg
cccgccgtcctggccgccatggccctgggggaggagggcgtccagagggtcgccggcggc
gacgcgccggcgaccggctccgccgaggtctccggcacgcccctgctcgtcgtcaccgcc
accggccgcgaggccgaggagaccgccctggccctgcgcagctacctgccggccgacgac
gtcgccgtcatgcccgcctgggagaccctgccccacgagcgtctctcgccgcgcgccgac
actgtcgcccagcgcctgtccgtcctgcgccgcctggcccaccccgaggagggtggggcg
atccgtgtcctcatcgttcccgtgcgtgccctgttggcccccgtcatcgccgggctcggc
gagcttgagcccgttcagctggcccccggtctgaccgtcggcctggaggagaccgcccgc
cgcctggaggccgccgcctacacgcgcgtcgacatggtcgagtcccgcggcgagtacgcc
gtgcgcggcggcatcctcgacgtcttcccgccctccgagccccggccggtgcgcgtggac
ttcttcggcgatgagatcgacgaggtctcctccttcgccgtcgccgaccagcgcaccatc
gagacgctgggcgccgtgaccgccaccgcctgccgcgagctggtcctcaccgacgcggtg
cgcgagcgcgccgccgccctggtcgacgccgtccccggcgccgccgacatgctggagaag
atcagtcagggcatcgccgtggagggcatggagtccctcgccccggtgctggtcgaggcg
atggtcccgctgctcgacctcgtcggcgaccggctcacggtgctgctggagcccgagcgg
gtgcgcaagcgcgccgaggacctgaccgccaccaccaccgagttcctcgctgccgcctgg
acctcagcggcctccggcggcacagtccccgtcgacctgtccgccgccgccttcgcccac
ctggccgaggcccgagccctggccctgtcctccaaccgcggctggtggtccttcaccgcc
ctggccgccggccccgagaccacccgactggacctcagcgacccccacacctaccgcggc
gagctcgagcgggccgtggccgacctgggccggctggcccgccagggctggaccgtcgtc
gtggctaccgacggtcccggacccggccggcgcatggcccagctcctgggcgacggcgac
gtccccgcccgcatcgtcgaccagctctcggaggtcggcgagctcggccgcgacggcgac
tgggcccccgacccggccacccctgccgaggacacggtcgacgagaccgatgccgatgga
tcggccggcgccccgacggcgggccccggcgacggcgtcgtgcgcgtcacccaggccagc
gccggccatggcttcctcgccgagggcctgcgcctggcactcatcgccgagtccgacctc
accgggcgggcctcggcaggcccccgcgagcgccgcagtctgccggcccgccgcgcccgc
cgctccgtggaccccctgtccctgcacgccggggaccttgtggttcatgcccagcacggg
gtggggcgcttcatcgagctgagccggcgcactgtgggtggggcccgctcctcggccacc
cgcgagtacctcgtcatcgagtacgccccctccaagcgcggccagcccggcgaccgactc
ctggtgccgaccgacgccctggaccaggtcaccaagtacgtcggcggcgacagccccgcc
ctgagcaagatgggcggcgccgactgggccaagaccaagtccaaggcccgcaaggccgtg
cgcgagatcgccggcgagctcgtgcgcctctacgccgcccgcgccgccaccaccggtcac
gccttcagccccgacaccccctggcagactgagctggaggaggccttcccctacaccgag
acccccgaccagctctccaccatcgacgaggtcaaggccgacatggagaaggcccagccc
atggaccgcctcgtgtgcggcgacgtcggctacggcaagaccgagatcgccgtgcgcgcc
gccttcaaggccgtccaggacggcaagcaggtcgcggtcctggtgcccacgaccctgctg
gtgagccagcacgccgagaccttcaccgagcgttacgccggcttcccggtgaccgtgggg
gccctgtcccgcttccaggatgccgccgagtccgccaaggtgctcgagggcctggagaag
gggagtgtcgacgtcgtcgtcggcacccaccgtctcatcaccggccaggtgaagttcaag
gacctgggcctggtcatcatcgatgaggagcagcgcttcggggtggagcacaaggagacc
ctcaaggcgctgcgcaccaacgtggatgtcctgtccatgtccgccaccccgatcccgcgc
accctggagatggcggtcaccggcctgcgcgagatgtctaccctggcgaccccgcccgag
gaccgccacccgatcctgacctacgtgggcgcttacgagaccaagcaggtctccgccgcg
atccgccgtgagctgctgcgcgaagggcaggtgttcttcgtccacaaccgggtcgaggac
attgacgccaccgccgcgcgcctggccgagctggtgcccgaggcgcgcgtggccaccgcc
cacgggcagatgaacgagcaccagctcgaggccgtcatcgactccttctggcgcaaggag
accgacgtgcttgtgtgcaccacgatcgtggagaccgggctggacgtgtccaacgccaac
accctcatcgtggaccgtgccgaccgcatgggcctgtcccagctccaccagctgcgcggg
cgcgtggggcgcggccgggagcgggcctacgcctacttcctctacccctcggacaagccg
ctgaccgagacggccctggagcgcctgcgcaccatcgccaccaacacggatctcggggcc
gggatgcaggtggccatgaaggacctggagatccgcggctcgggcaacctgctcggcggc
gagcagtccgggcacatcgccggggtcggcttcgatttgtacgtgcgcatggtgtccgag
gccgtggccgcctacaagaaggccctggcccgctccgggaaggccggggccgacgtgatc
ggctttgaggagggcgacgaggaggacgtcgagctgcgcatcgagctgcccgtggacgcc
accgtccccgaggactacatcccccacgagcgcctgcgcctggaggcgtacacgaagttc
gcggcggcgcgctcgggggagcaggtcgacgacgtcctggaggagctggccgaccgctac
gggcccgtgcctgaggcgacctcccgcctggcggcgctggcacgcctgcgggccctggcc
gccgagctgggggtgcgcgagatcgtcgcccagggcaagtcggtgcgctttgccccggtg
gacctgcccgagtcggcgcgtatgaaggtcacccgcctctacccgggcaccgtgctgaag
ccggccacgcgcaccatcgtggtgcctgccccgggcaccaaccgcatgggcggggcggcc
ctgtccggcgaggaggtcgtgcggtgggccgaggtgctcctgcgcgccgtcgtccagggc
gacgcctcctacgagaccgaggccaccacctaccgcaaacgccgctga
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