Actinoplanes oblitus: ACTOB_000762
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Entry
ACTOB_000762 CDS
T09687
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aou
Actinoplanes oblitus
Pathway
aou03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACTOB_000762 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aou03400
]
ACTOB_000762 (mfd)
Enzymes [BR:
aou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACTOB_000762 (mfd)
DNA repair and recombination proteins [BR:
aou03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACTOB_000762 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
RecG_dom3_C
UB2H
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
WIM97256
LinkDB
All DBs
Position
834488..838096
Genome browser
AA seq
1202 aa
AA seq
DB search
MQLAGLIPAALRDRGLARARDLARKSFVDADALDLTAPVSLRPFVVATVAGPADVGGAQR
PVLAVTATSREADDLADALGCLLDPDQVAVYPSWETLPHERLSPRSDTVGKRLAVLRRLA
HPGEQPLRVVVAPVRSLLQPQLKGLGDLEPVELVSGRAAELEEVARRLSDMAYARVDLVT
KRGEFAVRGGILDVFPPTDEHPSRVEFWGDEVEEIRTFAVADQRTIEQVERLWAPPCREL
LLTPAVRERAAALAARHPELAEILDKLSAGIPVEGMESLAPALLDGTDSMELLIDCMPAG
THVLLCDPERIRTRAHDLTRTSDEFLEASWAAAAVGGEAPIDVGAVAFRSLADVRAHAAV
LKQPWWTVSPFGLAAPSADEALPWEDSLAVEVSPDTGDAVALAAQPVPLYHGDTARLAGD
LSGWAAAGWAIALVFEGKGTAQRATELLRDAGLGITPVDSISTPIADGQLLVTCGGLNHG
FVDEASRLAVITGNDISGGRGASTKDMRKMPARRRNTIDPLELKMGDFVVHEQHGIGRYI
ELVQRTVNGADREYLVIEYAASKRGQPGDRLYVPTDQLDQLSRYVGGEQPTLHKMGGADW
QKSKARAKKAVKEIAAQLIQLYAARQASKGHSFGPDTPWQRELEDAFPYTETPDQLAAIH
EVKHDMELQTPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYNTFT
ERMSQFPVQIKQLSRFQTPKEAALTLEQAADGTADIVIGTHRLLSKSTRFKNLGLIIVDE
EQRFGVEHKEQLKALRASVDVLTMSATPIPRTLEMAITGIREMSTIATPPEERHPVLTYV
GAYDDKQVAAAIHRELLRDGQVFYLHNRVESIDRAARKLRELVPEARVAVAHGQMSEEQL
EKVMVGFWEKEFDVLVCTTIVESGIDIPNANTLILERADLLGLAQLHQIRGRVGRGRERA
YAYFLYPREKPLTEHAHERLATIAQHTELGAGMYVAMKDLEIRGAGNLLGGEQSGHIEGV
GFDLYVRMVGEAVSAFKGERPEEEPEVKIDLPVDAHLPTDYIAVERLRLEMYRKLAEARD
DARLEEVIAEMTDRYGEPPAPVVNLIAVARFRQLARAYGLTDVSMQGKHLRFAPLDLPDS
KQLRLKRYHPDSVYKAANDQVSVPRPSTRRVGGEPLRDQELLQWCAQLLKDVLGDAPVPA
RV
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcaactcgccggtctcatcccggccgccctgcgcgaccgcggcctcgcccgggcccgt
gacctggctcgcaagagcttcgtcgacgccgacgcgctggacctcaccgcgccggtctcg
ctgcgcccgttcgtggtggccacggtggccggtccggccgacgtcggtggcgcgcagcgc
ccggtgctcgcggtcaccgcgacctcgcgcgaggcggacgacctggccgacgcgctcggc
tgcctgctcgatccggaccaggtcgcggtctacccgtcctgggagacgctgccgcacgag
cggctgtccccgcgctcggacacggtcggcaagcggctggccgtgctgcgccgcctggcc
caccccggtgagcagcccctgcgggtggtcgtggcgccggtccggtcgctgctgcagccg
cagctcaagggcctcggcgacctggagccggtggagctggtcagcggtcgtgcggccgag
ctggaggaggtcgcccggcggctgtccgacatggcgtacgcgcgggtcgacctggtcacc
aagcggggcgagttcgccgtccgcggcggcatcctggacgtcttcccgcccaccgacgag
cacccgtcccgggtggagttctggggcgacgaggtggaggagatccgcaccttcgcggtc
gccgaccagcggacgatcgagcaggtcgagcggctgtgggcgccgccgtgccgggagctg
ctgctcaccccggcggtgcgggagcgggccgcggcgctggccgcccggcacccggagctg
gccgagatcctggacaaactctccgccggcatcccggtcgaggggatggagtcgctggcc
cccgccctgctggacggcaccgacagcatggagctgctgatcgactgcatgccggcgggc
acccacgtgctgctctgcgacccggagcggatccggacccgggcgcacgatctcacccgg
acgtcggacgagttcctggaggcctcctgggccgcggcggcggtcggtggtgaggcgccg
atcgacgtcggcgccgtcgcgttccgcagcctggccgatgtccgcgcgcacgccgcggtg
ctgaagcagccgtggtggacggtctcgccgttcggcctcgccgcgccgtcggccgacgag
gcgctgccctgggaggactccttggccgtcgaggtcagcccggacaccggcgacgccgtc
gcgctggccgcccagccggtgccgctctatcacggcgacaccgcgcggctggccggcgac
ctgtccgggtgggccgccgccggctgggcgatcgcgctggtcttcgagggcaaggggacc
gcgcagcgggccaccgagctgctgcgcgacgcgggtctcgggatcaccccggtcgactcg
atcagcaccccgatcgccgacggtcagctgctggtcacctgcggcgggctgaaccacggc
ttcgtcgacgaggcctcccggctcgcggtgatcaccggtaacgacatctccggtggccgc
ggcgcgtccaccaaggacatgcgcaagatgccggcccgccggcgcaacacgatcgacccg
ctcgagctgaagatgggcgacttcgtggtgcacgagcagcacggcatcggccgctacatc
gagctggtgcagcgcaccgtcaacggcgccgaccgggaatacctggtgatcgagtacgcc
gcgtccaagcgcggccagcccggcgaccggctctacgtgcccaccgaccagctcgaccag
ctctcccgctacgtcggcggcgagcagcccacgctgcacaagatgggcggcgccgactgg
cagaagagcaaggcccgggcgaagaaggcggtcaaggagatcgccgcccagctgatccag
ctgtacgccgcccggcaggcctccaagggccactcgttcgggccggacacgccgtggcag
cgggagctggaggacgccttcccgtacaccgagacgcccgaccagctggccgccatccac
gaggtcaagcacgacatggaactgcagaccccgatggaccggctgatctgcggcgacgtc
ggttacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcggtgcaggacggcaaa
caggtggccgttctggtgcccaccacgctgctggcccagcagcactacaacacgttcacc
gagcggatgagccagttcccggtgcagatcaagcagctgtcccggttccagacgccgaaa
gaggccgcgctcaccctggagcaggccgccgacggcaccgccgacatcgtgatcggcacg
caccggctgctctccaagtcgacccggttcaaaaatctcggcctgatcatcgtggacgag
gagcagcgcttcggcgtcgagcacaaggagcagctcaaggcgctgcgcgcgtcggtggac
gtgctgaccatgtcggccaccccgatcccgcggacgctggagatggcgatcaccggcatc
cgggagatgtccaccatcgccaccccgccggaggagcggcacccggtgctgacctacgtg
ggggcgtacgacgacaagcaggtcgccgccgccatccaccgggagctgctccgcgacggc
caggtgttctacctgcacaaccgggtcgagtcgatcgaccgggcggcgcgcaagctgcgc
gagctggtgcccgaggcccgggtcgcggtggcgcacggccagatgagcgaggagcagctg
gagaaggtgatggtcggcttctgggagaaggagttcgacgtcctggtctgcaccacgatc
gtcgagtccggcatcgacatcccgaacgccaacaccctgatcctggagcgcgccgacctg
ctcggcctggcccagctgcaccagatccgcggccgggtcggccgggggcgggagcgggcg
tacgcgtacttcctctacccccgggagaaaccgctcaccgagcacgcccacgagcggctg
gccaccatcgcccagcacaccgagctgggcgccggcatgtacgtggcgatgaaggacctg
gagatccgcggcgccggcaacctgctcggcggcgagcagtccggccacatcgagggcgtc
ggcttcgacctgtacgtccggatggtcggcgaggcggtcagcgccttcaagggcgagcgg
cccgaggaggagcccgaggtcaagatcgacctgccggtcgacgcgcacctgcccaccgac
tacatcgccgtcgagcggctgcgcctggagatgtaccgcaagctcgccgaggcccgcgac
gacgcccggctggaggaggtcatcgccgagatgaccgaccggtacggcgaaccgcccgcc
ccggtggtcaacctgatcgctgtcgcccggttccgccagctggcccgggcgtacggcctg
accgacgtctcgatgcagggcaagcatctccgcttcgccccgctcgacctgcccgactcc
aagcagctgcggctcaagcgctaccacccggactcggtctacaaggcggcgaacgatcag
gtcagtgtcccgcggccgagcacccggcgggtcggcggcgagccgctgcgcgaccaggag
ctgttgcagtggtgcgcccagctgctcaaggacgtgctcggcgacgcgcccgtcccggcc
cgcgtgtga
DBGET
integrated database retrieval system
