Actinoplanes oblitus: ACTOB_003949
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Entry
ACTOB_003949 CDS
T09687
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aou
Actinoplanes oblitus
Pathway
aou03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACTOB_003949 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aou03400
]
ACTOB_003949 (ligD)
Enzymes [BR:
aou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACTOB_003949 (ligD)
DNA repair and recombination proteins [BR:
aou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACTOB_003949 (ligD)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
WIN00254
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Position
4406986..4408200
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AA seq
404 aa
AA seq
DB search
MTPEQTMPDLVPPMLAAPGPLPAEAGWAFEYKFDGVRAIAYAERGAVRLLSRNGNDVTTT
YPELQQLAGLLPGRRAILDGEIVALEPGDRPSFARLAARMHVAAPAVTLVKSVPVVYYAF
DLLWLDGRSLIDLPYQRRRDELTGLALQSAVARTPPEFVGVDGGAVLRAAESGGLEGVVA
KRLGSPYRPGKRSADWTKVPLVRTQEVLVIGWKPGEGRRAGTIGSLLLAVRDEHDRLRFA
GHVGTGFTDVMLGQLRDRLATLERTTAPVPDVPREHARRAGWVEPVLVGEVAFRNWTPEG
RLRHPSWRGLRTDRGVGAARRQPDPAVPPASGQVRGAFQTPDGRWRVEAVQRGGDHFYRL
LRGDNVIDGLGIAAVRQLLDQAGVDFADLVEAHPGAPAGRPEVA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
gtgacacctgagcagaccatgccggacctggtgccgccgatgctggccgcgcccggcccg
ctgcccgccgaggccggctgggcgttcgagtacaagttcgacggcgtccgcgcgatcgcc
tacgccgagcgcggcgccgtccggctgctctcgcgcaacggcaacgacgtgaccacgacc
tacccggagctgcagcagctggccgggctcctgccgggccgccgggcgatcctggacggc
gagatcgtcgcgctggagccgggggaccggccgtcgttcgcccggctggccgcccggatg
cacgtcgcggcgccggccgtgaccctggtcaagtcggtgccggtggtctactacgccttc
gacctgctgtggctcgacgggcggtcgctgatcgacctgccgtaccagcggcgccgcgac
gaactgaccggcctggccctgcagtccgccgtggcgcgcaccccgccggagttcgtcggc
gtcgacgggggcgcggtgctgcgggccgccgagtccggtgggctcgaaggcgtggtcgcc
aagcggctcggctcgccctaccggcccggcaagcggtcggcggactggacgaaggtgccg
ctggtgcgcacccaggaggtgctggtcatcggctggaagcccggcgagggacggcgcgcc
ggcacgatcggctcgctgctgctggccgtgcgcgacgagcacgaccggctgcggttcgcc
gggcacgtgggcaccgggttcaccgatgtcatgctgggccagctgcgggaccggctcgcc
acgctcgagcgcaccaccgccccggtgcccgacgtgccgcgcgaacacgcccgccgggcc
ggctgggtcgagccggtcctggtcggcgaggtcgcgttccgcaactggaccccggagggc
cggctgcggcacccgtcctggcgtggcctgcgcaccgaccgcggtgtcggcgccgcccgc
cggcagccggatccggccgtgccgccggcgtccggccaggtgcggggcgctttccagacg
ccggacggccgctggcgggtcgaggcggtccagcgcggcggcgaccacttctaccggctg
ctgcgcggcgacaatgtcatcgacgggctcggcatcgccgccgtgcggcagctgctcgac
caggccggtgtcgatttcgccgatctggtcgaggcccaccccggcgcgcccgccggccgg
ccggaggtggcctga
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