Isoalcanivorax pacificus: S7S_12540
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Entry
S7S_12540 CDS
T03580
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
apac
Isoalcanivorax pacificus
Pathway
apac03410
Base excision repair
apac03430
Mismatch repair
apac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
S7S_12540
03430 Mismatch repair
S7S_12540
03440 Homologous recombination
S7S_12540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apac03400
]
S7S_12540
DNA repair and recombination proteins [BR:
apac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
S7S_12540
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
S7S_12540
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
S7S_12540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AJD48920
UniProt:
A0A0B4XQ86
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All DBs
Position
complement(2846639..2848309)
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AA seq
556 aa
AA seq
DB search
MSPLLARILAARGVVRPDQLSFALKHQMPPPDALPGMAQAVALLCRAREAGQRILVVGDY
DADGATATVVMLRGLAMLGFPAPGFLVPDRFVFGYGLSPAIVDLAVQQGAPDLLITVDNG
IASVEGVAAAREAGIQVLITDHHLPGEHLPQADAIVNPRLQPAGPGQHLAGVGVAFFLLS
ALRAALREQGDAGAASAPLADLLDLVALGTVADVVVLDDLNRALVEQGLRRIRSGRCVPG
IAALLRVGRREPERVVASDLGFAAGPRLNAAGRLTEMSLGIECLLTDDPVRAMHLAEQLD
GINRERRSIEQGMRDAAMAHVALLRERHDPLPPALCLHDDGWHEGVVGILASRVREATHR
PVVAFAPSQEPGLLKGSGRSIAGLHLRDVLDRVATRYPGLLHRFGGHAMAAGMTLATASL
PRFRDALSEAVQAMAQPGLFDEVVETDGELSAAELDLAHAELLCHAFPWGQGFAAPSFDG
EFEVLDHRVVGERHLKLTLGLPQTGAIIDAIHFNADLPRLPSPLRAIRGVYRLDVNVWQG
RRSPQLIFEYLEALRA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcccccctgctggcgcgcatccttgccgcccgtggcgtggtgcgtcccgatcagctc
agctttgccttgaaacaccagatgccgccaccggatgccctgcctggcatggcgcaggcg
gtcgcattgttgtgccgggcgcgagaggccgggcagcgcattctggtggtcggcgattac
gatgccgatggcgccacggcgaccgtcgtcatgctgcgcgggctggccatgctggggttt
cctgcgccgggcttcctggtgccggatcgctttgtgtttggttacggcctgtcgccggcc
attgtcgatctggctgtgcagcagggcgccccggacctgctgattacagtggataacggc
atcgcaagtgtcgagggtgtcgcggcggcgcgtgaagccggcattcaggttctgatcacc
gatcatcacttgcccggtgagcacctgccgcaggcggatgccatcgtcaatccgcgcctc
cagccggccgggccgggccagcatctggccggtgtcggcgtggccttcttcttgctgagt
gctttgcgtgctgcattgcgtgaacagggtgatgccggggcggccagcgcgccgctggcg
gatctgctcgatctggtggcgctgggcacggtggctgatgtagtggtgctggatgatctg
aaccgcgcgctggtcgagcagggattgcgccgtatccgcagcggccgctgtgtgcccggt
attgccgcgctgctgcgggtggggcggcgtgaaccggagcgggtggtggccagtgacctg
ggttttgctgccgggccgaggttgaatgccgccggccggctgacggaaatgagcctgggc
attgaatgcctgctcaccgacgacccggtgcgcgccatgcatctggcggaacaactcgac
ggtattaaccgcgagcggcgcagtatcgagcagggcatgcgtgacgccgccatggcacac
gtggcgctcctgcgtgaacggcatgacccgctgcccccggcgctgtgcctgcatgacgat
ggctggcatgaaggggtggtcggcatcctcgcgtcacgcgtacgtgaggcgactcaccgg
ccggtggtagccttcgcgccatcgcaggagccgggcctgctgaaaggctccgggcgttcc
atcgccggtctgcacctgcgcgatgtgctggaccgggtggccacccggtatcctggcctg
ttgcatcgttttggcggccacgccatggctgctggcatgacactggcgacggcatcattg
ccgcgctttcgtgacgcgttgagtgaggccgtgcaggccatggcgcaaccgggcctgttc
gacgaggtcgtcgagacagacggcgaactgtccgccgccgaactggacctggcccatgcg
gaattgctgtgccatgccttcccctggggccagggctttgccgcgccgtcgttcgatggc
gagttcgaggtgctggatcaccgcgtggtgggcgagcgccacctgaagctgaccctgggc
ctgccgcagaccggcgccatcatcgacgccatccatttcaacgccgacctgccgcgtttg
ccgtcccccctgcgcgccattcgcggcgtttaccgccttgacgtcaatgtctggcagggc
cggcgcagcccgcagctgatttttgagtatctggaggcgctgcgcgcctag
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